MirGeneDB 2.1

107 microRNA genes of family MIR-196
Sort by genome coordinates Motifs
MirGeneDB ID MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Cin-Mir-196 cin-mir-196 MIR-196 AGGUAGU MIMAT0016413 MIMAT0016414 7 2713377 2713429 - Olfactores Olfactores Unknown 1
Pma-Mir-196-o1 pma-mir-196a MIR-196 AGGUAGU MIMAT0019502 MIMAT0019503 NC_046078.1 8134714 8134775 + P. marinus Olfactores No 1
Tgu-Mir-196-P1 tgu-mir-196 MIR-196 AGGUAGU MIMAT0025394 None 2 33989168 33989226 - Gnathostomata Olfactores No 1
Sto-Mir-196-P1 None MIR-196 AGGUAGU None None BFAA01000097.1 1251099 1251156 - Gnathostomata Olfactores No 1
Hsa-Mir-196-P1 hsa-mir-196b MIR-196 AGGUAGU MIMAT0001080 MIMAT0009201 chr7 27169492 27169549 - Gnathostomata Olfactores No 1
Ami-Mir-196-P1 ami-mir-196-3 MIR-196 AGGUAGU MIMAT0038215 None NW_017712875.1 24902813 24902871 - Gnathostomata Olfactores Unknown 1
Cmi-Mir-196-P1 None MIR-196 AGGUAGU None None KI635933.1 1104598 1104655 + Gnathostomata Olfactores No 1
Mml-Mir-196-P1 mml-mir-196b MIR-196 AGGUAGU MIMAT0006229 MIMAT0026840 chr3 81000158 81000215 + Gnathostomata Olfactores No 1
Cpi-Mir-196-P1 cpi-mir-196-3 MIR-196 AGGUAGU MIMAT0037815 None JH584682 644036 644094 - Gnathostomata Olfactores Unknown 1
Mmu-Mir-196-P1 mmu-mir-196b MIR-196 AGGUAGU MIMAT0001081 MIMAT0017170 chr6 52230093 52230150 - Gnathostomata Olfactores No 1
Aca-Mir-196-P1 aca-mir-196a-1 MIR-196 AGGUAGU MIMAT0021831 None GL343275.1 1429558 1429620 + Gnathostomata Olfactores No 1
Pbv-Mir-196-P1 pbv-mir-196c MIR-196 AGGUAGU MIMAT0038995 None KE953980.1 281968 282028 + Gnathostomata Olfactores Unknown 1
Cpo-Mir-196-P1 cpo-mir-196b MIR-196 AGGUAGU MIMAT0047082 MIMAT0047083 scaffold_44 3907441 3907498 - Gnathostomata Olfactores No 1
Gja-Mir-196-P1 None MIR-196 AGGUAGU None None NW_015170898.1 1224278 1224340 - Gnathostomata Olfactores No 1
Ocu-Mir-196-P1 ocu-mir-196b MIR-196 AGGUAGU MIMAT0048315 MIMAT0048316 chr10 11887975 11888032 - Gnathostomata Olfactores No 1
Spt-Mir-196-P1 None MIR-196 AGGUAGU None None QEPC01011191.1 2904310 2904370 - Gnathostomata Olfactores Unknown 1
Cfa-Mir-196-P1 cfa-mir-196b MIR-196 AGGUAGU MIMAT0006620 None chr14 40344005 40344062 - Gnathostomata Olfactores No 1
Bta-Mir-196-P1 bta-mir-196b MIR-196 AGGUAGU MIMAT0009256 None NC_037331.1 68873169 68873226 + Gnathostomata Olfactores No 1
Xtr-Mir-196-P1 xtr-mir-196b MIR-196 AGGUAGU MIMAT0003691 None chr6 32896546 32896604 + Gnathostomata Olfactores Unknown 1
Dno-Mir-196-P1 dno-mir-196b MIR-196 AGGUAGU MIMAT0047731 MIMAT0047732 JH562181 5934 5991 - Gnathostomata Olfactores No 1
Mun-Mir-196-P1 None MIR-196 AGGUAGU None None 196-P1_LR594632.1:169050405-169050547 43 101 - Gnathostomata Olfactores Unknown 1
Ete-Mir-196-P1 None MIR-196 AGGUAGU None None JH980305 55282907 55282964 - Gnathostomata Olfactores No 1
Lch-Mir-196-P1 None MIR-196 AGGUAGU None None JH126711.1 2060364 2060422 - Gnathostomata Olfactores Unknown 1
Sha-Mir-196-P1 None MIR-196 AGGUAGU None None GL861706.1 2274380 2274438 + Gnathostomata Olfactores No 1
Mdo-Mir-196-P1 mdo-mir-196b MIR-196 AGGUAGU MIMAT0004124 None 8 297346810 297346868 + Gnathostomata Olfactores Unknown 1
Oan-Mir-196-P1 oan-mir-196b MIR-196 AGGUAGU MIMAT0007139 MIMAT0007140 NC_041735.1 55167001 55167059 + Gnathostomata Olfactores Unknown 1
Gga-Mir-196-P1 gga-mir-196-2 MIR-196 AGGUAGU MIMAT0001121 MIMAT0026504 2 32649895 32649953 - Gnathostomata Olfactores No 1
Cli-Mir-196-P1 cli-mir-196-3 MIR-196 AGGUAGU MIMAT0038570 MIMAT0038572 scaffold699 1139790 1139848 - Gnathostomata Olfactores No 1
Loc-Mir-196-P1 None MIR-196 AGGUAGU None None LG11 41141719 41141777 - Gnathostomata Olfactores No 1
Rno-Mir-196-P1d rno-mir-196b-2 MIR-196 AGGUAGU MIMAT0001082 MIMAT0017171 chr4 82199068 82199125 - R. norvegicus Olfactores No 1
Pma-Mir-196-o2 None MIR-196 AGGUAGU None None NC_046070.1 1095082 1095141 + P. marinus Olfactores Unknown 1
Pma-Mir-196-o3 None MIR-196 AGGUAGU None None NC_046124.1 733295 733353 - P. marinus Olfactores Unknown 1
Sto-Mir-196-P3 None MIR-196 AGGUAGU None None BFAA01000145.1 370520 370577 - Gnathostomata Olfactores Unknown 1
Hsa-Mir-196-P3 hsa-mir-196a-1 MIR-196 AGGUAGU MIMAT0000226 MIMAT0037307 chr17 48632494 48632553 - Gnathostomata Olfactores No 1
Ami-Mir-196-P3 ami-mir-196-1 MIR-196 AGGUAGU MIMAT0038215 None NW_017708231.1 3471039 3471098 - Gnathostomata Olfactores Unknown 1
Cmi-Mir-196-P3 None MIR-196 AGGUAGU None None KI635976.1 1249990 1250047 + Gnathostomata Olfactores No 1
Mml-Mir-196-P3 mml-mir-196a-1 MIR-196 AGGUAGU MIMAT0002519 None chr16 41255194 41255253 + Gnathostomata Olfactores No 1
Cpi-Mir-196-P3 cpi-mir-196-1 MIR-196 AGGUAGU MIMAT0037815 MIMAT0037816 JH584731 2484790 2484849 - Gnathostomata Olfactores No 1
Mmu-Mir-196-P3 mmu-mir-196a-1 MIR-196 AGGUAGU MIMAT0000518 MIMAT0017013 chr11 96265187 96265246 + Gnathostomata Olfactores No 1
Aca-Mir-196-P3 aca-mir-196c MIR-196 AGGUAGU MIMAT0021832 MIMAT0021833 6 75666553 75666613 - Gnathostomata Olfactores No 1
Rno-Mir-196-P3 rno-mir-196c MIR-196 AGGUAGU MIMAT0005303 MIMAT0017299 chr10 84113588 84113647 + Gnathostomata Olfactores No 1
Pbv-Mir-196-P3 pbv-mir-196a MIR-196 AGGUAGU MIMAT0038993 MIMAT0038994 KE954034.1 30623 30683 - Gnathostomata Olfactores Unknown 1
Cpo-Mir-196-P3 cpo-mir-196a MIR-196 AGGUAGU MIMAT0047078 MIMAT0047079 scaffold_53 8623790 8623849 + Gnathostomata Olfactores No 1
Gja-Mir-196-P3 None MIR-196 AGGUAGU None None NW_015168072.1 216886 216946 + Gnathostomata Olfactores Unknown 1
Ocu-Mir-196-P3 ocu-mir-196a-1 MIR-196 AGGUAGU MIMAT0048311 MIMAT0048312 chr19 38730720 38730779 + Gnathostomata Olfactores No 1
Spt-Mir-196-P3 None MIR-196 AGGUAGU None None QEPC01008679.1 1374373 1374431 - Gnathostomata Olfactores Unknown 1
Cfa-Mir-196-P3 cfa-mir-196a-1 MIR-196 AGGUAGU MIMAT0006662 None chr9 24895683 24895742 - Gnathostomata Olfactores Unknown 1
Bta-Mir-196-P3 bta-mir-196a-1 MIR-196 AGGUAGU MIMAT0009255 None NC_037346.1 37860888 37860947 + Gnathostomata Olfactores No 1
Dno-Mir-196-P3 dno-mir-196c MIR-196 AGGUAGU MIMAT0047733 MIMAT0047734 JH566304 23130 23189 - Gnathostomata Olfactores No 1
Lch-Mir-196-P3 None MIR-196 AGGUAGU None None JH126617.1 1196138 1196196 - Gnathostomata Olfactores Unknown 1
Sha-Mir-196-P3 None MIR-196 AGGUAGU None None GL856828.1 1096256 1096315 - Gnathostomata Olfactores No 1
Mdo-Mir-196-P3 mdo-mir-196a MIR-196 AGGUAGU MIMAT0028494 MIMAT0028495 2 201215985 201216044 - Gnathostomata Olfactores No 1
Gga-Mir-196-P3 gga-mir-196-1 MIR-196 AGGUAGU MIMAT0001121 MIMAT0031017 27 6183444 6183503 + Gnathostomata Olfactores No 1
Cli-Mir-196-P3 cli-mir-196-1 MIR-196 AGGUAGU MIMAT0038570 MIMAT0038571 scaffold265 1508615 1508674 + Gnathostomata Olfactores No 1
Loc-Mir-196-P3 None MIR-196 AGGUAGU None None LG15 9244730 9244790 - Gnathostomata Olfactores No 1
Tgu-Mir-196-P4 None MIR-196 AGGUAGU None None 29 2679763 2679820 + Gnathostomata Olfactores Unknown 1
Hsa-Mir-196-P4 hsa-mir-196a-2 MIR-196 AGGUAGU MIMAT0000226 MIMAT0004562 chr12 53991762 53991820 + Gnathostomata Olfactores No 1
Ami-Mir-196-P4 ami-mir-196-2 MIR-196 AGGUAGU MIMAT0038215 None NW_017708254.1 280066 280123 + Gnathostomata Olfactores Unknown 1
Cmi-Mir-196-P4 None MIR-196 AGGUAGU None None KI636119.1 230953 231010 + Gnathostomata Olfactores No 1
Mml-Mir-196-P4 mml-mir-196a-2 MIR-196 AGGUAGU MIMAT0002519 MIMAT0026839 chr11 52660864 52660922 + Gnathostomata Olfactores No 1
Cpi-Mir-196-P4 cpi-mir-196-2 MIR-196 AGGUAGU MIMAT0037815 MIMAT0037817 JH584844 1085528 1085585 - Gnathostomata Olfactores No 1
Mmu-Mir-196-P4 mmu-mir-196a-2 MIR-196 AGGUAGU MIMAT0000518 MIMAT0004618 chr15 102973365 102973423 + Gnathostomata Olfactores No 1
Aca-Mir-196-P4 aca-mir-196a-2 MIR-196 AGGUAGU MIMAT0021831 None 2 72077189 72077246 - Gnathostomata Olfactores No 1
Rno-Mir-196-P4 rno-mir-196a MIR-196 AGGUAGU MIMAT0000871 MIMAT0004737 chr7 144584259 144584317 + Gnathostomata Olfactores No 1
Cpo-Mir-196-P4 cpo-mir-196c MIR-196 AGGUAGU MIMAT0047080 MIMAT0047081 scaffold_9 45819379 45819437 - Gnathostomata Olfactores No 1
Gja-Mir-196-P4 None MIR-196 AGGUAGU None None NW_015167536.1 481383 481440 - Gnathostomata Olfactores No 1
Ocu-Mir-196-P4 ocu-mir-196a-2 MIR-196 AGGUAGU MIMAT0048313 MIMAT0048314 chr4 37775899 37775957 + Gnathostomata Olfactores No 1
Spt-Mir-196-P4 None MIR-196 AGGUAGU None None QEPC01003896.1 1321540 1321597 - Gnathostomata Olfactores Unknown 1
Cfa-Mir-196-P4 cfa-mir-196a-2 MIR-196 AGGUAGU MIMAT0006662 None chr27 1270718 1270776 - Gnathostomata Olfactores No 1
Bta-Mir-196-P4 bta-mir-196a-2 MIR-196 AGGUAGU MIMAT0009255 None NC_037332.1 26040804 26040862 - Gnathostomata Olfactores No 1
Xtr-Mir-196-P4 xtr-mir-196a MIR-196 AGGUAGU MIMAT0003690 None chr2 142905384 142905444 - Gnathostomata Olfactores No 1
Dno-Mir-196-P4 dno-mir-196a MIR-196 AGGUAGU MIMAT0047729 MIMAT0047730 JH569826 1030436 1030494 + Gnathostomata Olfactores No 1
Mun-Mir-196-P4 None MIR-196 AGGUAGU None None 196-P3_LR594634.1:315333046-315333189 44 101 - Gnathostomata Olfactores Unknown 1
Ete-Mir-196-P4 None MIR-196 AGGUAGU None None JH980427 757096 757154 + Gnathostomata Olfactores No 1
Lch-Mir-196-P4 None MIR-196 AGGUAGU None None JH126829.1 1686811 1686868 - Gnathostomata Olfactores Unknown 1
Sha-Mir-196-P4 None MIR-196 AGGUAGU None None GL861729.1 250515 250573 + Gnathostomata Olfactores No 1
Oan-Mir-196-P4 oan-mir-196a MIR-196 AGGUAGU MIMAT0006876 MIMAT0006877 NC_041737.1 57674459 57674517 + Gnathostomata Olfactores No 1
Gga-Mir-196-P4 gga-mir-196-3 MIR-196 AGGUAGU MIMAT0001121 None 33 7592237 7592294 + Gnathostomata Olfactores No 1
Cli-Mir-196-P4 cli-mir-196-2 MIR-196 AGGUAGU MIMAT0038570 None scaffold922 197745 197802 + Gnathostomata Olfactores No
Loc-Mir-196-P4 None MIR-196 AGGUAGU None None None None None None Gnathostomata Olfactores No
Ebu-Mir-196-P5 None MIR-196 AGGUAGU None None FYBX02009525.1 1711837 1711894 - E. burgeri Olfactores Unknown 1
Ebu-Mir-196-P6 None MIR-196 AGGUAGU None None FYBX02009826.1 1916388 1916448 + E. burgeri Olfactores Unknown 1
Tni-Mir-196-P1a tni-mir-196a-2 MIR-196 AGGUAGU MIMAT0002956 None 21 3025758 3025815 + Clupeocephala Olfactores Unknown 1
Gmo-Mir-196-P1a gmo-mir-196a MIR-196 AGGUAGU MIMAT0044146 None GeneScaffold_1730 83617 83675 - Clupeocephala Olfactores No 1
Mal-Mir-196-P1a None MIR-196 AGGUAGU None None KV884831.1 1314516 1314573 - Clupeocephala Olfactores No 1
Dre-Mir-196-P1a dre-mir-196a-2 MIR-196 AGGUAGU MIMAT0001276 MIMAT0031983 chr19 19747629 19747686 + Clupeocephala Olfactores No 1
Xla-Mir-196-P1e None MIR-196 AGGUAGU None None NC_030734.1 39652903 39652962 - X. laevis Olfactores No 1
Tni-Mir-196-P3a tni-mir-196b MIR-196 AGGUAGU MIMAT0003034 None Un_random 5576389 5576449 - Clupeocephala Olfactores No 1
Mal-Mir-196-P3a None MIR-196 AGGUAGU None None KV884780.1 181712 181773 + Clupeocephala Olfactores No 1
Dre-Mir-196-P3a dre-mir-196b MIR-196 AGGUAGU MIMAT0001860 None chr3 23673387 23673447 + Clupeocephala Olfactores No 1
Gmo-Mir-196-P4a gmo-mir-196b MIR-196 AGGUAGU MIMAT0044059 None contig48991 1476 1534 + Clupeocephala Olfactores Unknown 1
Mal-Mir-196-P4a None MIR-196 AGGUAGU None None KV884694.1 1840009 1840067 - Clupeocephala Olfactores Unknown 1
Dre-Mir-196-P4a dre-mir-196a-1 MIR-196 AGGUAGU MIMAT0001276 None chr23 36088111 36088169 + Clupeocephala Olfactores No 1
Tni-Mir-196-P4a1 tni-mir-196a-1 MIR-196 AGGUAGU MIMAT0002956 None None None None None T. nigroviridis Olfactores Unknown
Tni-Mir-196-P4a2 tni-mir-196a-1 MIR-196 AGGUAGU MIMAT0002956 None None None None None T. nigroviridis Olfactores Unknown
Tni-Mir-196-P4a3 tni-mir-196a-1 MIR-196 AGGUAGU MIMAT0002956 None None None None None T. nigroviridis Olfactores Unknown
Tni-Mir-196-P1b None MIR-196 AGGUAGU None None 8 6797449 6797506 + Clupeocephala Olfactores No 1
Gmo-Mir-196-P1b None MIR-196 AGGUAGU None None contig689238 4120 4178 + Clupeocephala Olfactores Unknown 1
Mal-Mir-196-P1b None MIR-196 AGGUAGU None None KV884815.1 2846296 2846353 + Clupeocephala Olfactores No 1
Dre-Mir-196-P1b dre-mir-196d MIR-196 AGGUAGU MIMAT0011313 None chr16 20913420 20913478 + Clupeocephala Olfactores No
Xla-Mir-196-P1f None MIR-196 AGGUAGU None None NC_030735.1 33756951 33757010 - X. laevis Olfactores No 1
Dre-Mir-196-P4b dre-mir-196c MIR-196 AGGUAGU MIMAT0011298 None chr11 2190643 2190701 + Clupeocephala Olfactores No 1
Rno-Mir-196-P1c rno-mir-196b-1 MIR-196 AGGUAGU MIMAT0001082 MIMAT0017171 chr4 82284863 82284920 - R. norvegicus Olfactores No 1
Xla-Mir-196-P4d-v1 None MIR-196 AGGUAGU None None NC_030727.1 128789652 128789713 - X. laevis Olfactores No 1
Xla-Mir-196-P4c-v1 None MIR-196 AGGUAGU None None NC_030726.1 148332751 148332811 - X. laevis Olfactores No 1
Xla-Mir-196-P4d-v2 None MIR-196 GGUAGUU None None NC_030727.1 128789653 128789712 - X. laevis Olfactores Unknown 1
Xla-Mir-196-P4c-v2 None MIR-196 GGUAGUU None None NC_030726.1 148332752 148332810 - X. laevis Olfactores Unknown 1

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