##gff-version 3 # microRNAs: MirGeneDB v2.0 # genome-build-id: Capitella_teleta_v1.0 CAPTEscaffold_114 . pre_miRNA 319163 319225 . + . ID=Cte-Bantam_pre;Alias=MI0010094 CAPTEscaffold_114 . miRNA 319163 319187 . + . ID=Cte-Bantam_5p* CAPTEscaffold_114 . miRNA 319203 319225 . + . ID=Cte-Bantam_3p;Alias=MIMAT0009551 CAPTEscaffold_135 . pre_miRNA 267314 267381 . + . ID=Cte-Let-7_pre;Alias=MI0010095 CAPTEscaffold_135 . miRNA 267314 267335 . + . ID=Cte-Let-7_5p;Alias=MIMAT0009552 CAPTEscaffold_135 . miRNA 267360 267381 . + . ID=Cte-Let-7_3p* CAPTEscaffold_274 . pre_miRNA 105952 106014 . - . ID=Cte-Mir-1_pre;Alias=MI0010046 CAPTEscaffold_274 . miRNA 105992 106014 . - . ID=Cte-Mir-1_5p* CAPTEscaffold_274 . miRNA 105952 105973 . - . ID=Cte-Mir-1_3p;Alias=MIMAT0009502 CAPTEscaffold_933 . pre_miRNA 10046 10112 . + . ID=Cte-Mir-2-o13_pre;Alias=MI0010048 CAPTEscaffold_933 . miRNA 10046 10066 . + . ID=Cte-Mir-2-o13_5p* CAPTEscaffold_933 . miRNA 10091 10112 . + . ID=Cte-Mir-2-o13_3p;Alias=MIMAT0009504 CAPTEscaffold_933 . pre_miRNA 10412 10472 . + . ID=Cte-Mir-2-o14_pre;Alias=MI0010049 CAPTEscaffold_933 . miRNA 10412 10433 . + . ID=Cte-Mir-2-o14_5p* CAPTEscaffold_933 . miRNA 10450 10472 . + . ID=Cte-Mir-2-o14_3p;Alias=MIMAT0009505 CAPTEscaffold_933 . pre_miRNA 10541 10616 . + . ID=Cte-Mir-2-o15_pre;Alias=MI0010047 CAPTEscaffold_933 . miRNA 10541 10562 . + . ID=Cte-Mir-2-o15_5p* CAPTEscaffold_933 . miRNA 10594 10616 . + . ID=Cte-Mir-2-o15_3p;Alias=MIMAT0009503 CAPTEscaffold_876 . pre_miRNA 29247 29305 . - . ID=Cte-Mir-2-o16_pre;Alias=MI0010214 CAPTEscaffold_876 . miRNA 29283 29305 . - . ID=Cte-Mir-2-o16_5p* CAPTEscaffold_876 . miRNA 29247 29269 . - . ID=Cte-Mir-2-o16_3p;Alias=MIMAT0009678 CAPTEscaffold_876 . pre_miRNA 29085 29145 . - . ID=Cte-Mir-2-o17_pre;Alias=MI0012156 CAPTEscaffold_876 . miRNA 29124 29145 . - . ID=Cte-Mir-2-o17_5p*;Alias=MIMAT0013578 CAPTEscaffold_876 . miRNA 29085 29106 . - . ID=Cte-Mir-2-o17_3p CAPTEscaffold_876 . pre_miRNA 28955 29017 . - . ID=Cte-Mir-2-o18_pre;Alias=MI0012114 CAPTEscaffold_876 . miRNA 28994 29017 . - . ID=Cte-Mir-2-o18_5p* CAPTEscaffold_876 . miRNA 28955 28976 . - . ID=Cte-Mir-2-o18_3p;Alias=MIMAT0013528 CAPTEscaffold_36111 . pre_miRNA 940 1000 . + . ID=Cte-Mir-2-o19_pre;Alias=MI0012113 CAPTEscaffold_36111 . miRNA 940 960 . + . ID=Cte-Mir-2-o19_5p* CAPTEscaffold_36111 . miRNA 977 1000 . + . ID=Cte-Mir-2-o19_3p;Alias=MIMAT0013527 CAPTEscaffold_933 . pre_miRNA 10173 10226 . + . ID=Cte-Mir-2-P12_pre;Alias=MI0012140 CAPTEscaffold_933 . miRNA 10173 10194 . + . ID=Cte-Mir-2-P12_5p* CAPTEscaffold_933 . miRNA 10204 10226 . + . ID=Cte-Mir-2-P12_3p;Alias=MIMAT0013559 CAPTEscaffold_85 . pre_miRNA 61656 61717 . + . ID=Cte-Mir-7_pre;Alias=MI0010050 CAPTEscaffold_85 . miRNA 61656 61679 . + . ID=Cte-Mir-7_5p;Alias=MIMAT0009506 CAPTEscaffold_85 . miRNA 61695 61717 . + . ID=Cte-Mir-7_3p* CAPTEscaffold_548 . pre_miRNA 60524 60584 . + . ID=Cte-Mir-8_pre;Alias=MI0010051 CAPTEscaffold_548 . miRNA 60524 60545 . + . ID=Cte-Mir-8_5p* CAPTEscaffold_548 . miRNA 60562 60584 . + . ID=Cte-Mir-8_3p;Alias=MIMAT0009507 CAPTEscaffold_250 . pre_miRNA 129678 129738 . + . ID=Cte-Mir-9_pre;Alias=MI0010052 CAPTEscaffold_250 . miRNA 129678 129700 . + . ID=Cte-Mir-9_5p;Alias=MIMAT0009508 CAPTEscaffold_250 . miRNA 129716 129738 . + . ID=Cte-Mir-9_3p*;Alias=MIMAT0009554 CAPTEscaffold_70 . pre_miRNA 265131 265196 . - . ID=Cte-Mir-10-P1_pre;Alias=MI0010053 CAPTEscaffold_70 . miRNA 265175 265196 . - . ID=Cte-Mir-10-P1_5p;Alias=MIMAT0009509 CAPTEscaffold_70 . miRNA 265131 265152 . - . ID=Cte-Mir-10-P1_3p* CAPTEscaffold_135 . pre_miRNA 267093 267153 . + . ID=Cte-Mir-10-P2_pre;Alias=MI0010068 CAPTEscaffold_135 . miRNA 267093 267114 . + . ID=Cte-Mir-10-P2_5p;Alias=MIMAT0009524 CAPTEscaffold_135 . miRNA 267132 267153 . + . ID=Cte-Mir-10-P2_3p* CAPTEscaffold_135 . pre_miRNA 290568 290628 . + . ID=Cte-Mir-10-P3_pre;Alias=MI0010069 CAPTEscaffold_135 . miRNA 290568 290589 . + . ID=Cte-Mir-10-P3_5p;Alias=MIMAT0009525 CAPTEscaffold_135 . miRNA 290607 290628 . + . ID=Cte-Mir-10-P3_3p* CAPTEscaffold_70 . pre_miRNA 218590 218651 . + . ID=Cte-Mir-10-P4_pre;Alias=MI0012115 CAPTEscaffold_70 . miRNA 218590 218612 . + . ID=Cte-Mir-10-P4_5p* CAPTEscaffold_70 . miRNA 218630 218651 . + . ID=Cte-Mir-10-P4_3p;Alias=MIMAT0013529 CAPTEscaffold_70 . pre_miRNA 411688 411746 . - . ID=Cte-Mir-10-P5_pre;Alias=MI0010054 CAPTEscaffold_70 . miRNA 411723 411746 . - . ID=Cte-Mir-10-P5_5p;Alias=MIMAT0009510 CAPTEscaffold_70 . miRNA 411688 411709 . - . ID=Cte-Mir-10-P5_3p* CAPTEscaffold_292 . pre_miRNA 57243 57305 . - . ID=Cte-Mir-10-P6_pre;Alias=MI0012133 CAPTEscaffold_292 . miRNA 57282 57305 . - . ID=Cte-Mir-10-P6_5p;Alias=MIMAT0013551 CAPTEscaffold_292 . miRNA 57243 57266 . - . ID=Cte-Mir-10-P6_3p* CAPTEscaffold_70 . pre_miRNA 317880 317941 . - . ID=Cte-Mir-10-P7_pre;Alias=MI0010055 CAPTEscaffold_70 . miRNA 317919 317941 . - . ID=Cte-Mir-10-P7_5p;Alias=MIMAT0009511 CAPTEscaffold_70 . miRNA 317880 317901 . - . ID=Cte-Mir-10-P7_3p* CAPTEscaffold_70 . pre_miRNA 317882 317943 . + . ID=Cte-Mir-10-P7-as_pre;Alias=MI0010055 CAPTEscaffold_70 . miRNA 317882 317903 . + . ID=Cte-Mir-10-P7-as_5p;Alias=MIMAT0009511 CAPTEscaffold_70 . miRNA 317921 317943 . + . ID=Cte-Mir-10-P7-as_3p* CAPTEscaffold_70 . pre_miRNA 255158 255218 . + . ID=Cte-Mir-10-P8_pre CAPTEscaffold_70 . miRNA 255158 255179 . + . ID=Cte-Mir-10-P8_5p CAPTEscaffold_70 . miRNA 255197 255218 . + . ID=Cte-Mir-10-P8_3p* CAPTEscaffold_192 . pre_miRNA 33844 33902 . - . ID=Cte-Mir-12_pre;Alias=MI0010056 CAPTEscaffold_192 . miRNA 33881 33902 . - . ID=Cte-Mir-12_5p;Alias=MIMAT0009512 CAPTEscaffold_192 . miRNA 33844 33864 . - . ID=Cte-Mir-12_3p* CAPTEscaffold_133 . pre_miRNA 228398 228455 . + . ID=Cte-Mir-22-P1_pre;Alias=MI0010089 CAPTEscaffold_133 . miRNA 228398 228420 . + . ID=Cte-Mir-22-P1_5p* CAPTEscaffold_133 . miRNA 228434 228455 . + . ID=Cte-Mir-22-P1_3p;Alias=MIMAT0009545 CAPTEscaffold_133 . pre_miRNA 228627 228683 . + . ID=Cte-Mir-22-P2_pre;Alias=MI0010090 CAPTEscaffold_133 . miRNA 228627 228651 . + . ID=Cte-Mir-22-P2_5p* CAPTEscaffold_133 . miRNA 228662 228683 . + . ID=Cte-Mir-22-P2_3p;Alias=MIMAT0009546 CAPTEscaffold_794 . pre_miRNA 7597 7665 . - . ID=Cte-Mir-29-P1_pre;Alias=MI0010058 CAPTEscaffold_794 . miRNA 7644 7665 . - . ID=Cte-Mir-29-P1_5p* CAPTEscaffold_794 . miRNA 7597 7618 . - . ID=Cte-Mir-29-P1_3p;Alias=MIMAT0009514 CAPTEscaffold_794 . pre_miRNA 6889 6954 . - . ID=Cte-Mir-29-P2_pre;Alias=MI0010057 CAPTEscaffold_794 . miRNA 6932 6954 . - . ID=Cte-Mir-29-P2_5p* CAPTEscaffold_794 . miRNA 6889 6910 . - . ID=Cte-Mir-29-P2_3p;Alias=MIMAT0009513 CAPTEscaffold_43 . pre_miRNA 86484 86544 . - . ID=Cte-Mir-31_pre;Alias=MI0010059 CAPTEscaffold_43 . miRNA 86522 86544 . - . ID=Cte-Mir-31_5p;Alias=MIMAT0009515 CAPTEscaffold_43 . miRNA 86484 86505 . - . ID=Cte-Mir-31_3p* CAPTEscaffold_91 . pre_miRNA 237768 237827 . - . ID=Cte-Mir-33_pre;Alias=MI0010096 CAPTEscaffold_91 . miRNA 237807 237827 . - . ID=Cte-Mir-33_5p;Alias=MIMAT0009553 CAPTEscaffold_91 . miRNA 237768 237789 . - . ID=Cte-Mir-33_3p* CAPTEscaffold_114 . pre_miRNA 443343 443404 . - . ID=Cte-Mir-34_pre;Alias=MI0010060 CAPTEscaffold_114 . miRNA 443382 443404 . - . ID=Cte-Mir-34_5p;Alias=MIMAT0009516 CAPTEscaffold_114 . miRNA 443343 443364 . - . ID=Cte-Mir-34_3p* CAPTEscaffold_19 . pre_miRNA 701730 701789 . - . ID=Cte-Mir-36_pre;Alias=MI0012116 CAPTEscaffold_19 . miRNA 701766 701789 . - . ID=Cte-Mir-36_5p* CAPTEscaffold_19 . miRNA 701730 701751 . - . ID=Cte-Mir-36_3p;Alias=MIMAT0013530 CAPTEscaffold_664 . pre_miRNA 25476 25536 . + . ID=Cte-Mir-67_pre;Alias=MI0010211 CAPTEscaffold_664 . miRNA 25476 25499 . + . ID=Cte-Mir-67_5p* CAPTEscaffold_664 . miRNA 25513 25536 . + . ID=Cte-Mir-67_3p;Alias=MIMAT0009675 CAPTEscaffold_933 . pre_miRNA 9934 9996 . + . ID=Cte-Mir-71_pre;Alias=MI0010061 CAPTEscaffold_933 . miRNA 9934 9956 . + . ID=Cte-Mir-71_5p;Alias=MIMAT0009517 CAPTEscaffold_933 . miRNA 9974 9996 . + . ID=Cte-Mir-71_3p* CAPTEscaffold_84 . pre_miRNA 33972 34034 . + . ID=Cte-Mir-76_pre;Alias=MI0010092 CAPTEscaffold_84 . miRNA 33972 33994 . + . ID=Cte-Mir-76_5p* CAPTEscaffold_84 . miRNA 34012 34034 . + . ID=Cte-Mir-76_3p;Alias=MIMAT0009548 CAPTEscaffold_222 . pre_miRNA 219605 219665 . - . ID=Cte-Mir-87-P1_pre;Alias=MI0010063 CAPTEscaffold_222 . miRNA 219641 219665 . - . ID=Cte-Mir-87-P1_5p* CAPTEscaffold_222 . miRNA 219605 219626 . - . ID=Cte-Mir-87-P1_3p;Alias=MIMAT0009519 CAPTEscaffold_222 . pre_miRNA 219067 219151 . - . ID=Cte-Mir-87-P2_pre;Alias=MI0010062 CAPTEscaffold_222 . miRNA 219128 219151 . - . ID=Cte-Mir-87-P2_5p* CAPTEscaffold_222 . miRNA 219067 219088 . - . ID=Cte-Mir-87-P2_3p;Alias=MIMAT0009518 CAPTEscaffold_14 . pre_miRNA 595238 595297 . - . ID=Cte-Mir-92-o36_pre;Alias=MI0010065 CAPTEscaffold_14 . miRNA 595277 595297 . - . ID=Cte-Mir-92-o36_5p* CAPTEscaffold_14 . miRNA 595238 595259 . - . ID=Cte-Mir-92-o36_3p;Alias=MIMAT0009521 CAPTEscaffold_14 . pre_miRNA 594348 594403 . - . ID=Cte-Mir-92-o37_pre;Alias=MI0010064 CAPTEscaffold_14 . miRNA 594381 594403 . - . ID=Cte-Mir-92-o37_5p CAPTEscaffold_14 . miRNA 594348 594369 . - . ID=Cte-Mir-92-o37_3p*;Alias=MIMAT0009520 CAPTEscaffold_14 . pre_miRNA 594225 594286 . - . ID=Cte-Mir-92-o38_pre;Alias=MI0010066 CAPTEscaffold_14 . miRNA 594265 594286 . - . ID=Cte-Mir-92-o38_5p* CAPTEscaffold_14 . miRNA 594225 594246 . - . ID=Cte-Mir-92-o38_3p;Alias=MIMAT0009522 CAPTEscaffold_14 . pre_miRNA 595402 595468 . - . ID=Cte-Mir-92-o61_pre CAPTEscaffold_14 . miRNA 595446 595468 . - . ID=Cte-Mir-92-o61_5p* CAPTEscaffold_14 . miRNA 595402 595423 . - . ID=Cte-Mir-92-o61_3p CAPTEscaffold_181 . pre_miRNA 4334 4396 . + . ID=Cte-Mir-96-P1_pre;Alias=MI0010067 CAPTEscaffold_181 . miRNA 4334 4356 . + . ID=Cte-Mir-96-P1_5p;Alias=MIMAT0009523 CAPTEscaffold_181 . miRNA 4375 4396 . + . ID=Cte-Mir-96-P1_3p* CAPTEscaffold_522 . pre_miRNA 115197 115256 . - . ID=Cte-Mir-96-P2_pre;Alias=MI0010073 CAPTEscaffold_522 . miRNA 115233 115256 . - . ID=Cte-Mir-96-P2_5p;Alias=MIMAT0009529 CAPTEscaffold_522 . miRNA 115197 115218 . - . ID=Cte-Mir-96-P2_3p* CAPTEscaffold_823 . pre_miRNA 64095 64178 . - . ID=Cte-Mir-96-P3_pre CAPTEscaffold_823 . miRNA 64156 64178 . - . ID=Cte-Mir-96-P3_5p CAPTEscaffold_823 . miRNA 64095 64116 . - . ID=Cte-Mir-96-P3_3p* CAPTEscaffold_156 . pre_miRNA 154734 154791 . + . ID=Cte-Mir-124_pre;Alias=MI0010098 CAPTEscaffold_156 . miRNA 154734 154756 . + . ID=Cte-Mir-124_5p* CAPTEscaffold_156 . miRNA 154771 154791 . + . ID=Cte-Mir-124_3p;Alias=MIMAT0009555 CAPTEscaffold_274 . pre_miRNA 99094 99159 . - . ID=Cte-Mir-133_pre;Alias=MI0010070 CAPTEscaffold_274 . miRNA 99137 99159 . - . ID=Cte-Mir-133_5p* CAPTEscaffold_274 . miRNA 99094 99115 . - . ID=Cte-Mir-133_3p;Alias=MIMAT0009526 CAPTEscaffold_130 . pre_miRNA 173761 173821 . + . ID=Cte-Mir-137_pre;Alias=MI0010071 CAPTEscaffold_130 . miRNA 173761 173783 . + . ID=Cte-Mir-137_5p* CAPTEscaffold_130 . miRNA 173800 173821 . + . ID=Cte-Mir-137_3p;Alias=MIMAT0009527 CAPTEscaffold_2 . pre_miRNA 539891 539950 . - . ID=Cte-Mir-153_pre;Alias=MI0010072 CAPTEscaffold_2 . miRNA 539930 539950 . - . ID=Cte-Mir-153_5p* CAPTEscaffold_2 . miRNA 539891 539912 . - . ID=Cte-Mir-153_3p;Alias=MIMAT0009528 CAPTEscaffold_291 . pre_miRNA 120205 120266 . + . ID=Cte-Mir-184-P16_pre;Alias=MI0010074 CAPTEscaffold_291 . miRNA 120205 120226 . + . ID=Cte-Mir-184-P16_5p* CAPTEscaffold_291 . miRNA 120245 120266 . + . ID=Cte-Mir-184-P16_3p;Alias=MIMAT0009530 CAPTEscaffold_291 . pre_miRNA 120376 120436 . + . ID=Cte-Mir-184-P17_pre;Alias=MI0010075 CAPTEscaffold_291 . miRNA 120376 120397 . + . ID=Cte-Mir-184-P17_5p* CAPTEscaffold_291 . miRNA 120415 120436 . + . ID=Cte-Mir-184-P17_3p;Alias=MIMAT0009531 CAPTEscaffold_291 . pre_miRNA 208586 208646 . + . ID=Cte-Mir-190_pre;Alias=MI0010076 CAPTEscaffold_291 . miRNA 208586 208609 . + . ID=Cte-Mir-190_5p;Alias=MIMAT0009532 CAPTEscaffold_291 . miRNA 208625 208646 . + . ID=Cte-Mir-190_3p* CAPTEscaffold_127 . pre_miRNA 175298 175355 . - . ID=Cte-Mir-193-P1_pre;Alias=MI0010077 CAPTEscaffold_127 . miRNA 175333 175355 . - . ID=Cte-Mir-193-P1_5p* CAPTEscaffold_127 . miRNA 175298 175319 . - . ID=Cte-Mir-193-P1_3p;Alias=MIMAT0009533 CAPTEscaffold_481 . pre_miRNA 63203 63261 . - . ID=Cte-Mir-193-P2_pre;Alias=MI0010087 CAPTEscaffold_481 . miRNA 63240 63261 . - . ID=Cte-Mir-193-P2_5p* CAPTEscaffold_481 . miRNA 63203 63224 . - . ID=Cte-Mir-193-P2_3p;Alias=MIMAT0009543 CAPTEscaffold_591 . pre_miRNA 25368 25430 . - . ID=Cte-Mir-210-P6_pre;Alias=MI0012150 CAPTEscaffold_591 . miRNA 25408 25430 . - . ID=Cte-Mir-210-P6_5p* CAPTEscaffold_591 . miRNA 25368 25389 . - . ID=Cte-Mir-210-P6_3p;Alias=MIMAT0013572 CAPTEscaffold_591 . pre_miRNA 19538 19606 . - . ID=Cte-Mir-210-P7_pre;Alias=MI0010078 CAPTEscaffold_591 . miRNA 19583 19606 . - . ID=Cte-Mir-210-P7_5p* CAPTEscaffold_591 . miRNA 19538 19561 . - . ID=Cte-Mir-210-P7_3p;Alias=MIMAT0009534 CAPTEscaffold_192 . pre_miRNA 34362 34430 . - . ID=Cte-Mir-216-P1_pre;Alias=MI0010215 CAPTEscaffold_192 . miRNA 34408 34430 . - . ID=Cte-Mir-216-P1_5p;Alias=MIMAT0009679 CAPTEscaffold_192 . miRNA 34362 34383 . - . ID=Cte-Mir-216-P1_3p* CAPTEscaffold_192 . pre_miRNA 34755 34815 . - . ID=Cte-Mir-216-P2c_pre;Alias=MI0010079 CAPTEscaffold_192 . miRNA 34793 34815 . - . ID=Cte-Mir-216-P2c_5p;Alias=MIMAT0009535 CAPTEscaffold_192 . miRNA 34755 34776 . - . ID=Cte-Mir-216-P2c_3p* CAPTEscaffold_192 . pre_miRNA 33996 34066 . - . ID=Cte-Mir-216-P2d_pre;Alias=MI0012148 CAPTEscaffold_192 . miRNA 34044 34066 . - . ID=Cte-Mir-216-P2d_5p CAPTEscaffold_192 . miRNA 33996 34017 . - . ID=Cte-Mir-216-P2d_3p*;Alias=MIMAT0013570 CAPTEscaffold_273 . pre_miRNA 18981 19041 . + . ID=Cte-Mir-219_pre;Alias=MI0010099 CAPTEscaffold_273 . miRNA 18981 19003 . + . ID=Cte-Mir-219_5p;Alias=MIMAT0009556 CAPTEscaffold_273 . miRNA 19020 19041 . + . ID=Cte-Mir-219_3p CAPTEscaffold_453 . pre_miRNA 18518 18578 . - . ID=Cte-Mir-242_pre;Alias=MI0010216 CAPTEscaffold_453 . miRNA 18557 18578 . - . ID=Cte-Mir-242_5p;Alias=MIMAT0009680 CAPTEscaffold_453 . miRNA 18518 18539 . - . ID=Cte-Mir-242_3p* CAPTEscaffold_296 . pre_miRNA 190705 190762 . + . ID=Cte-Mir-252-P1_pre;Alias=MI0010081 CAPTEscaffold_296 . miRNA 190705 190726 . + . ID=Cte-Mir-252-P1_5p;Alias=MIMAT0009537 CAPTEscaffold_296 . miRNA 190742 190762 . + . ID=Cte-Mir-252-P1_3p* CAPTEscaffold_296 . pre_miRNA 191494 191555 . + . ID=Cte-Mir-252-P2_pre;Alias=MI0010080 CAPTEscaffold_296 . miRNA 191494 191515 . + . ID=Cte-Mir-252-P2_5p;Alias=MIMAT0009536 CAPTEscaffold_296 . miRNA 191534 191555 . + . ID=Cte-Mir-252-P2_3p* CAPTEscaffold_114 . pre_miRNA 443887 443966 . - . ID=Cte-Mir-277-P1_pre;Alias=MI0012117 CAPTEscaffold_114 . miRNA 443944 443966 . - . ID=Cte-Mir-277-P1_5p* CAPTEscaffold_114 . miRNA 443887 443908 . - . ID=Cte-Mir-277-P1_3p;Alias=MIMAT0013531 CAPTEscaffold_114 . pre_miRNA 443745 443810 . - . ID=Cte-Mir-277-P2_pre;Alias=MI0012153 CAPTEscaffold_114 . miRNA 443788 443810 . - . ID=Cte-Mir-277-P2_5p* CAPTEscaffold_114 . miRNA 443745 443766 . - . ID=Cte-Mir-277-P2_3p;Alias=MIMAT0013575 CAPTEscaffold_296 . pre_miRNA 103173 103248 . + . ID=Cte-Mir-278_pre;Alias=MI0010082 CAPTEscaffold_296 . miRNA 103173 103195 . + . ID=Cte-Mir-278_5p* CAPTEscaffold_296 . miRNA 103227 103248 . + . ID=Cte-Mir-278_3p;Alias=MIMAT0009538 CAPTEscaffold_19 . pre_miRNA 703521 703582 . - . ID=Cte-Mir-279-o34_pre;Alias=MI0010083 CAPTEscaffold_19 . miRNA 703561 703582 . - . ID=Cte-Mir-279-o34_5p* CAPTEscaffold_19 . miRNA 703521 703541 . - . ID=Cte-Mir-279-o34_3p;Alias=MIMAT0009539 CAPTEscaffold_39 . pre_miRNA 146002 146056 . + . ID=Cte-Mir-279-o35_pre;Alias=MI0012134 CAPTEscaffold_39 . miRNA 146002 146024 . + . ID=Cte-Mir-279-o35_5p* CAPTEscaffold_39 . miRNA 146035 146056 . + . ID=Cte-Mir-279-o35_3p;Alias=MIMAT0013552 CAPTEscaffold_39 . pre_miRNA 146223 146291 . + . ID=Cte-Mir-279-o36_pre;Alias=MI0012136 CAPTEscaffold_39 . miRNA 146223 146245 . + . ID=Cte-Mir-279-o36_5p*;Alias=MIMAT0013554 CAPTEscaffold_39 . miRNA 146270 146291 . + . ID=Cte-Mir-279-o36_3p;Alias=MIMAT0013555 CAPTEscaffold_777 . pre_miRNA 24457 24511 . + . ID=Cte-Mir-281_pre;Alias=MI0010084 CAPTEscaffold_777 . miRNA 24457 24477 . + . ID=Cte-Mir-281_5p* CAPTEscaffold_777 . miRNA 24490 24511 . + . ID=Cte-Mir-281_3p;Alias=MIMAT0009540 CAPTEscaffold_522 . pre_miRNA 128181 128243 . - . ID=Cte-Mir-315_pre;Alias=MI0010085 CAPTEscaffold_522 . miRNA 128221 128243 . - . ID=Cte-Mir-315_5p;Alias=MIMAT0009541 CAPTEscaffold_522 . miRNA 128181 128202 . - . ID=Cte-Mir-315_3p* CAPTEscaffold_114 . pre_miRNA 444019 444076 . - . ID=Cte-Mir-317_pre;Alias=MI0010086 CAPTEscaffold_114 . miRNA 444055 444076 . - . ID=Cte-Mir-317_5p* CAPTEscaffold_114 . miRNA 444019 444043 . - . ID=Cte-Mir-317_3p;Alias=MIMAT0009542 CAPTEscaffold_28 . pre_miRNA 184584 184641 . - . ID=Cte-Mir-375-P15_pre;Alias=MI0010088 CAPTEscaffold_28 . miRNA 184620 184641 . - . ID=Cte-Mir-375-P15_5p* CAPTEscaffold_28 . miRNA 184584 184605 . - . ID=Cte-Mir-375-P15_3p;Alias=MIMAT0009544 CAPTEscaffold_28 . pre_miRNA 184401 184458 . - . ID=Cte-Mir-375-P16_pre CAPTEscaffold_28 . miRNA 184437 184458 . - . ID=Cte-Mir-375-P16_5p* CAPTEscaffold_28 . miRNA 184401 184422 . - . ID=Cte-Mir-375-P16_3p CAPTEscaffold_910 . pre_miRNA 14366 14434 . + . ID=Cte-Mir-750_pre;Alias=MI0010091 CAPTEscaffold_910 . miRNA 14366 14388 . + . ID=Cte-Mir-750_5p* CAPTEscaffold_910 . miRNA 14412 14434 . + . ID=Cte-Mir-750_3p;Alias=MIMAT0009547 CAPTEscaffold_910 . pre_miRNA 15451 15510 . + . ID=Cte-Mir-1175_pre;Alias=MI0010093 CAPTEscaffold_910 . miRNA 15451 15473 . + . ID=Cte-Mir-1175_5p*;Alias=MIMAT0009549 CAPTEscaffold_910 . miRNA 15488 15510 . + . ID=Cte-Mir-1175_3p;Alias=MIMAT0009550 CAPTEscaffold_12 . pre_miRNA 607156 607216 . + . ID=Cte-Mir-1986_pre CAPTEscaffold_12 . miRNA 607156 607177 . + . ID=Cte-Mir-1986_5p* CAPTEscaffold_12 . miRNA 607195 607216 . + . ID=Cte-Mir-1986_3p CAPTEscaffold_122 . pre_miRNA 378005 378063 . + . ID=Cte-Mir-1987_pre;Alias=MI0010232 CAPTEscaffold_122 . miRNA 378005 378027 . + . ID=Cte-Mir-1987_5p* CAPTEscaffold_122 . miRNA 378042 378063 . + . ID=Cte-Mir-1987_3p;Alias=MIMAT0009703 CAPTEscaffold_107 . pre_miRNA 265961 266017 . - . ID=Cte-Mir-1989_pre;Alias=MI0010233 CAPTEscaffold_107 . miRNA 265996 266017 . - . ID=Cte-Mir-1989_5p;Alias=MIMAT0009704 CAPTEscaffold_107 . miRNA 265961 265982 . - . ID=Cte-Mir-1989_3p CAPTEscaffold_12 . pre_miRNA 600050 600112 . + . ID=Cte-Mir-1990-P1_pre;Alias=MI0012129 CAPTEscaffold_12 . miRNA 600050 600071 . + . ID=Cte-Mir-1990-P1_5p;Alias=MIMAT0013547 CAPTEscaffold_12 . miRNA 600091 600112 . + . ID=Cte-Mir-1990-P1_3p* CAPTEscaffold_12 . pre_miRNA 606811 606875 . + . ID=Cte-Mir-1990-P2_pre;Alias=MI0012128 CAPTEscaffold_12 . miRNA 606811 606832 . + . ID=Cte-Mir-1990-P2_5p;Alias=MIMAT0013546 CAPTEscaffold_12 . miRNA 606854 606875 . + . ID=Cte-Mir-1990-P2_3p* CAPTEscaffold_12 . pre_miRNA 606809 606873 . - . ID=Cte-Mir-1990-P2-as_pre;Alias=MI0012130 CAPTEscaffold_12 . miRNA 606852 606873 . - . ID=Cte-Mir-1990-P2-as_5p* CAPTEscaffold_12 . miRNA 606809 606830 . - . ID=Cte-Mir-1990-P2-as_3p;Alias=MIMAT0013548 CAPTEscaffold_189 . pre_miRNA 201929 201990 . + . ID=Cte-Mir-1992_pre;Alias=MI0010229 CAPTEscaffold_189 . miRNA 201929 201950 . + . ID=Cte-Mir-1992_5p* CAPTEscaffold_189 . miRNA 201968 201990 . + . ID=Cte-Mir-1992_3p;Alias=MIMAT0009700 CAPTEscaffold_421 . pre_miRNA 174512 174569 . + . ID=Cte-Mir-1993_pre;Alias=MI0010230 CAPTEscaffold_421 . miRNA 174512 174533 . + . ID=Cte-Mir-1993_5p* CAPTEscaffold_421 . miRNA 174548 174569 . + . ID=Cte-Mir-1993_3p;Alias=MIMAT0009701 CAPTEscaffold_194 . pre_miRNA 66138 66207 . + . ID=Cte-Mir-1994_pre;Alias=MI0010231 CAPTEscaffold_194 . miRNA 66138 66160 . + . ID=Cte-Mir-1994_5p* CAPTEscaffold_194 . miRNA 66186 66207 . + . ID=Cte-Mir-1994_3p;Alias=MIMAT0009702 CAPTEscaffold_394 . pre_miRNA 114750 114808 . + . ID=Cte-Mir-1995_pre;Alias=MI0010235 CAPTEscaffold_394 . miRNA 114750 114771 . + . ID=Cte-Mir-1995_5p;Alias=MIMAT0009706 CAPTEscaffold_394 . miRNA 114787 114808 . + . ID=Cte-Mir-1995_3p* CAPTEscaffold_158 . pre_miRNA 126000 126057 . - . ID=Cte-Mir-1996_pre;Alias=MI0010236 CAPTEscaffold_158 . miRNA 126036 126057 . - . ID=Cte-Mir-1996_5p;Alias=MIMAT0009707 CAPTEscaffold_158 . miRNA 126000 126021 . - . ID=Cte-Mir-1996_3p* CAPTEscaffold_158 . pre_miRNA 126202 126269 . - . ID=Cte-Mir-1996-as_pre;Alias=MI0010241 CAPTEscaffold_158 . miRNA 126248 126269 . - . ID=Cte-Mir-1996-as_5p*;Alias=MIMAT0009712 CAPTEscaffold_158 . miRNA 126202 126224 . - . ID=Cte-Mir-1996-as_3p CAPTEscaffold_20 . pre_miRNA 24860 24918 . + . ID=Cte-Mir-1997_pre;Alias=MI0010237 CAPTEscaffold_20 . miRNA 24860 24881 . + . ID=Cte-Mir-1997_5p* CAPTEscaffold_20 . miRNA 24896 24918 . + . ID=Cte-Mir-1997_3p;Alias=MIMAT0009708 CAPTEscaffold_24 . pre_miRNA 172651 172724 . - . ID=Cte-Mir-1998-v1_pre;Alias=MI0010238 CAPTEscaffold_24 . miRNA 172702 172724 . - . ID=Cte-Mir-1998-v1_5p* CAPTEscaffold_24 . miRNA 172651 172672 . - . ID=Cte-Mir-1998-v1_3p;Alias=MIMAT0009709 CAPTEscaffold_24 . pre_miRNA 172650 172725 . - . ID=Cte-Mir-1998-v2_pre;Alias=MI0010238 CAPTEscaffold_24 . miRNA 172703 172725 . - . ID=Cte-Mir-1998-v2_5p* CAPTEscaffold_24 . miRNA 172650 172671 . - . ID=Cte-Mir-1998-v2_3p;Alias=MIMAT0009709 CAPTEscaffold_384 . pre_miRNA 79440 79501 . - . ID=Cte-Mir-1999_pre;Alias=MI0010239 CAPTEscaffold_384 . miRNA 79481 79501 . - . ID=Cte-Mir-1999_5p* CAPTEscaffold_384 . miRNA 79440 79460 . - . ID=Cte-Mir-1999_3p;Alias=MIMAT0009710 CAPTEscaffold_24 . pre_miRNA 172461 172517 . - . ID=Cte-Mir-2000_pre;Alias=MI0010240 CAPTEscaffold_24 . miRNA 172496 172517 . - . ID=Cte-Mir-2000_5p* CAPTEscaffold_24 . miRNA 172461 172482 . - . ID=Cte-Mir-2000_3p;Alias=MIMAT0009711 CAPTEscaffold_296 . pre_miRNA 188020 188081 . + . ID=Cte-Mir-2001-v1_pre;Alias=MI0010234 CAPTEscaffold_296 . miRNA 188020 188040 . + . ID=Cte-Mir-2001-v1_5p;Alias=MIMAT0009705 CAPTEscaffold_296 . miRNA 188061 188081 . + . ID=Cte-Mir-2001-v1_3p* CAPTEscaffold_296 . pre_miRNA 188019 188082 . + . ID=Cte-Mir-2001-v2_pre;Alias=MI0010234 CAPTEscaffold_296 . miRNA 188019 188040 . + . ID=Cte-Mir-2001-v2_5p;Alias=MIMAT0009705 CAPTEscaffold_296 . miRNA 188061 188082 . + . ID=Cte-Mir-2001-v2_3p* CAPTEscaffold_777 . pre_miRNA 8901 8958 . - . ID=Cte-Mir-2685-P1_pre;Alias=MI0012124 CAPTEscaffold_777 . miRNA 8936 8958 . - . ID=Cte-Mir-2685-P1_5p*;Alias=MIMAT0013540 CAPTEscaffold_777 . miRNA 8901 8921 . - . ID=Cte-Mir-2685-P1_3p;Alias=MIMAT0013541 CAPTEscaffold_777 . pre_miRNA 8763 8827 . - . ID=Cte-Mir-2685-P2_pre;Alias=MI0012118 CAPTEscaffold_777 . miRNA 8805 8827 . - . ID=Cte-Mir-2685-P2_5p*;Alias=MIMAT0013532 CAPTEscaffold_777 . miRNA 8763 8784 . - . ID=Cte-Mir-2685-P2_3p;Alias=MIMAT0013533 CAPTEscaffold_174 . pre_miRNA 220483 220549 . + . ID=Cte-Mir-2686-P1_pre;Alias=MI0012122 CAPTEscaffold_174 . miRNA 220483 220504 . + . ID=Cte-Mir-2686-P1_5p* CAPTEscaffold_174 . miRNA 220527 220549 . + . ID=Cte-Mir-2686-P1_3p;Alias=MIMAT0013538 CAPTEscaffold_174 . pre_miRNA 220637 220693 . + . ID=Cte-Mir-2686-P2_pre;Alias=MI0012120 CAPTEscaffold_174 . miRNA 220637 220659 . + . ID=Cte-Mir-2686-P2_5p*;Alias=MIMAT0013535 CAPTEscaffold_174 . miRNA 220672 220693 . + . ID=Cte-Mir-2686-P2_3p;Alias=MIMAT0013536 CAPTEscaffold_174 . pre_miRNA 220806 220865 . + . ID=Cte-Mir-2686-P3_pre;Alias=MI0012121 CAPTEscaffold_174 . miRNA 220806 220829 . + . ID=Cte-Mir-2686-P3_5p* CAPTEscaffold_174 . miRNA 220843 220865 . + . ID=Cte-Mir-2686-P3_3p;Alias=MIMAT0013537 CAPTEscaffold_610 . pre_miRNA 82412 82480 . - . ID=Cte-Mir-2687_pre;Alias=MI0012123 CAPTEscaffold_610 . miRNA 82459 82480 . - . ID=Cte-Mir-2687_5p;Alias=MIMAT0013539 CAPTEscaffold_610 . miRNA 82412 82433 . - . ID=Cte-Mir-2687_3p* CAPTEscaffold_339 . pre_miRNA 64468 64526 . - . ID=Cte-Mir-2689_pre;Alias=MI0012125 CAPTEscaffold_339 . miRNA 64505 64526 . - . ID=Cte-Mir-2689_5p* CAPTEscaffold_339 . miRNA 64468 64490 . - . ID=Cte-Mir-2689_3p;Alias=MIMAT0013542 CAPTEscaffold_17 . pre_miRNA 567406 567469 . - . ID=Cte-Mir-2690_pre;Alias=MI0012126 CAPTEscaffold_17 . miRNA 567446 567469 . - . ID=Cte-Mir-2690_5p* CAPTEscaffold_17 . miRNA 567406 567428 . - . ID=Cte-Mir-2690_3p;Alias=MIMAT0013543 CAPTEscaffold_558 . pre_miRNA 79813 79879 . + . ID=Cte-Mir-2691_pre;Alias=MI0012127 CAPTEscaffold_558 . miRNA 79813 79835 . + . ID=Cte-Mir-2691_5p*;Alias=MIMAT0013544 CAPTEscaffold_558 . miRNA 79857 79879 . + . ID=Cte-Mir-2691_3p;Alias=MIMAT0013545 CAPTEscaffold_12 . pre_miRNA 600189 600249 . + . ID=Cte-Mir-2692_pre;Alias=MI0012131 CAPTEscaffold_12 . miRNA 600189 600211 . + . ID=Cte-Mir-2692_5p* CAPTEscaffold_12 . miRNA 600227 600249 . + . ID=Cte-Mir-2692_3p;Alias=MIMAT0013549 CAPTEscaffold_18 . pre_miRNA 712332 712390 . + . ID=Cte-Mir-2693_pre;Alias=MI0012132 CAPTEscaffold_18 . miRNA 712332 712353 . + . ID=Cte-Mir-2693_5p CAPTEscaffold_18 . miRNA 712369 712390 . + . ID=Cte-Mir-2693_3p*;Alias=MIMAT0013550 CAPTEscaffold_184 . pre_miRNA 188474 188536 . + . ID=Cte-Mir-2695_pre;Alias=MI0012137 CAPTEscaffold_184 . miRNA 188474 188496 . + . ID=Cte-Mir-2695_5p;Alias=MIMAT0013556 CAPTEscaffold_184 . miRNA 188515 188536 . + . ID=Cte-Mir-2695_3p CAPTEscaffold_434 . pre_miRNA 7355 7410 . - . ID=Cte-Mir-2697_pre;Alias=MI0012139 CAPTEscaffold_434 . miRNA 7389 7410 . - . ID=Cte-Mir-2697_5p;Alias=MIMAT0013558 CAPTEscaffold_434 . miRNA 7355 7376 . - . ID=Cte-Mir-2697_3p* CAPTEscaffold_300 . pre_miRNA 136643 136700 . - . ID=Cte-Mir-2699_pre;Alias=MI0012142 CAPTEscaffold_300 . miRNA 136679 136700 . - . ID=Cte-Mir-2699_5p;Alias=MIMAT0013561 CAPTEscaffold_300 . miRNA 136643 136664 . - . ID=Cte-Mir-2699_3p;Alias=MIMAT0013562 CAPTEscaffold_413 . pre_miRNA 101606 101668 . + . ID=Cte-Mir-2700_pre;Alias=MI0012143 CAPTEscaffold_413 . miRNA 101606 101627 . + . ID=Cte-Mir-2700_5p;Alias=MIMAT0013563 CAPTEscaffold_413 . miRNA 101647 101668 . + . ID=Cte-Mir-2700_3p* CAPTEscaffold_1278 . pre_miRNA 13412 13470 . + . ID=Cte-Mir-2701_pre;Alias=MI0012144 CAPTEscaffold_1278 . miRNA 13412 13433 . + . ID=Cte-Mir-2701_5p;Alias=MIMAT0013564 CAPTEscaffold_1278 . miRNA 13449 13470 . + . ID=Cte-Mir-2701_3p* CAPTEscaffold_140 . pre_miRNA 52385 52444 . - . ID=Cte-Mir-2702_pre;Alias=MI0012145 CAPTEscaffold_140 . miRNA 52423 52444 . - . ID=Cte-Mir-2702_5p*;Alias=MIMAT0013565 CAPTEscaffold_140 . miRNA 52385 52406 . - . ID=Cte-Mir-2702_3p;Alias=MIMAT0013566 CAPTEscaffold_394 . pre_miRNA 5014 5072 . - . ID=Cte-Mir-2703-P1_pre;Alias=MI0012146 CAPTEscaffold_394 . miRNA 5049 5072 . - . ID=Cte-Mir-2703-P1_5p*;Alias=MIMAT0013567 CAPTEscaffold_394 . miRNA 5014 5035 . - . ID=Cte-Mir-2703-P1_3p;Alias=MIMAT0013568 CAPTEscaffold_12304 . pre_miRNA 451 509 . + . ID=Cte-Mir-2703-P2_pre;Alias=MI0031755 CAPTEscaffold_12304 . miRNA 451 474 . + . ID=Cte-Mir-2703-P2_5p*;Alias=MIMAT0013567 CAPTEscaffold_12304 . miRNA 488 509 . + . ID=Cte-Mir-2703-P2_3p;Alias=MIMAT0013568 CAPTEscaffold_102 . pre_miRNA 389220 389279 . + . ID=Cte-Mir-2704_pre;Alias=MI0012147 CAPTEscaffold_102 . miRNA 389220 389241 . + . ID=Cte-Mir-2704_5p;Alias=MIMAT0013569 CAPTEscaffold_102 . miRNA 389258 389279 . + . ID=Cte-Mir-2704_3p* CAPTEscaffold_122 . pre_miRNA 377048 377109 . + . ID=Cte-Mir-2705_pre;Alias=MI0012149 CAPTEscaffold_122 . miRNA 377048 377071 . + . ID=Cte-Mir-2705_5p* CAPTEscaffold_122 . miRNA 377086 377109 . + . ID=Cte-Mir-2705_3p;Alias=MIMAT0013571 CAPTEscaffold_518 . pre_miRNA 98983 99044 . + . ID=Cte-Mir-2706_pre;Alias=MI0012151 CAPTEscaffold_518 . miRNA 98983 99005 . + . ID=Cte-Mir-2706_5p* CAPTEscaffold_518 . miRNA 99023 99044 . + . ID=Cte-Mir-2706_3p;Alias=MIMAT0013573 CAPTEscaffold_105 . pre_miRNA 375781 375840 . - . ID=Cte-Mir-2707_pre;Alias=MI0012152 CAPTEscaffold_105 . miRNA 375819 375840 . - . ID=Cte-Mir-2707_5p* CAPTEscaffold_105 . miRNA 375781 375804 . - . ID=Cte-Mir-2707_3p;Alias=MIMAT0013574 CAPTEscaffold_1308 . pre_miRNA 9126 9184 . - . ID=Cte-Mir-2708_pre;Alias=MI0012154 CAPTEscaffold_1308 . miRNA 9163 9184 . - . ID=Cte-Mir-2708_5p* CAPTEscaffold_1308 . miRNA 9126 9147 . - . ID=Cte-Mir-2708_3p;Alias=MIMAT0013576 CAPTEscaffold_445 . pre_miRNA 46126 46181 . - . ID=Cte-Mir-2710_pre;Alias=MI0012157 CAPTEscaffold_445 . miRNA 46160 46181 . - . ID=Cte-Mir-2710_5p;Alias=MIMAT0013579 CAPTEscaffold_445 . miRNA 46126 46147 . - . ID=Cte-Mir-2710_3p* CAPTEscaffold_234 . pre_miRNA 20073 20133 . + . ID=Cte-Mir-2711_pre;Alias=MI0012158 CAPTEscaffold_234 . miRNA 20073 20096 . + . ID=Cte-Mir-2711_5p;Alias=MIMAT0013580 CAPTEscaffold_234 . miRNA 20112 20133 . + . ID=Cte-Mir-2711_3p* CAPTEscaffold_824 . pre_miRNA 60226 60296 . - . ID=Cte-Mir-2716_pre;Alias=MI0012163 CAPTEscaffold_824 . miRNA 60275 60296 . - . ID=Cte-Mir-2716_5p* CAPTEscaffold_824 . miRNA 60226 60247 . - . ID=Cte-Mir-2716_3p;Alias=MIMAT0013585 CAPTEscaffold_234 . pre_miRNA 18731 18792 . - . ID=Cte-Mir-2719_pre;Alias=MI0012166 CAPTEscaffold_234 . miRNA 18772 18792 . - . ID=Cte-Mir-2719_5p;Alias=MIMAT0013588 CAPTEscaffold_234 . miRNA 18731 18753 . - . ID=Cte-Mir-2719_3p* CAPTEscaffold_149 . pre_miRNA 353474 353536 . - . ID=Cte-Novel-1_pre CAPTEscaffold_149 . miRNA 353513 353536 . - . ID=Cte-Novel-1_5p CAPTEscaffold_149 . miRNA 353474 353494 . - . ID=Cte-Novel-1_3p CAPTEscaffold_62 . pre_miRNA 217428 217487 . + . ID=Cte-Novel-2_pre CAPTEscaffold_62 . miRNA 217428 217449 . + . ID=Cte-Novel-2_5p* CAPTEscaffold_62 . miRNA 217466 217487 . + . ID=Cte-Novel-2_3p CAPTEscaffold_298 . pre_miRNA 127540 127600 . + . ID=Cte-Novel-3-P1_pre CAPTEscaffold_298 . miRNA 127540 127561 . + . ID=Cte-Novel-3-P1_5p* CAPTEscaffold_298 . miRNA 127579 127600 . + . ID=Cte-Novel-3-P1_3p CAPTEscaffold_8851 . pre_miRNA 769 828 . - . ID=Cte-Novel-3-P2_pre CAPTEscaffold_8851 . miRNA 807 828 . - . ID=Cte-Novel-3-P2_5p* CAPTEscaffold_8851 . miRNA 769 790 . - . ID=Cte-Novel-3-P2_3p CAPTEscaffold_35 . pre_miRNA 182586 182644 . + . ID=Cte-Novel-4_pre CAPTEscaffold_35 . miRNA 182586 182606 . + . ID=Cte-Novel-4_5p* CAPTEscaffold_35 . miRNA 182624 182644 . + . ID=Cte-Novel-4_3p