MirGeneDB 3.0
MirGeneDB ID

Aca-Mir-2188

Family name MIR-2188 (all species)
Seed AGGUCCA
Species Green anole lizard (Anolis carolinensis)
MiRBase ID aca-mir-2188
Paralogues
Orthologues Ami-Mir-2188  Cli-Mir-2188  Cmi-Mir-2188  Cpi-Mir-2188  Dre-Mir-2188  Gga-Mir-2188  Gja-Mir-2188  Gmo-Mir-2188  Lch-Mir-2188  Loc-Mir-2188  Mal-Mir-2188  Mdo-Mir-2188  Mun-Mir-2188  Oan-Mir-2188  Pbv-Mir-2188  Sha-Mir-2188  Spt-Mir-2188  Sto-Mir-2188  Tgu-Mir-2188  Tni-Mir-2188  Xla-Mir-2188-P1  Xla-Mir-2188-P2  Xtr-Mir-2188 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(anoCar2)		 GL343545.1: 105074-105134 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-2188)		 Mir-2188 GL343545.1: 105074-105134 [-] UCSC Ensembl
Mir-194-P4 GL343545.1: 154421-154479 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUUGGGGGACAUCAUCACACUUGUGGUCAAGGUCCAACCUCACGUGUCCUGUAUGCGAUAAAAGAGGGAUGCGUGUGGUCAGACCUAGCCCACAAGCCCUGUAUGCUCCUCACACACAG
Get precursor sequence
Structure
        10        20          30        40        50          
AUCUUGGGGGACAUCAUCACA--|      UCA     CA   U          GUAUGCG 
                       CUUGUGG   AGGUC  ACC CACGUGUCCU       \
                       GAACACC   UCCAG  UGG GUGCGUAGGG       A
GACACACACUCCUCGUAUGUCCC^      CGA     AC   U          AGAAAAU 
 .       110       100        90        80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sk Ta Ta To Wh
Mature sequence

Aca-Mir-2188_5p
mirBase accessionMIMAT0021882
Sequence 
0- AAGGUCCAACCUCACGUGUCCU -22
Get sequence
Star sequence

Aca-Mir-2188_3p*
mirBase accessionMIMAT0021883
Sequence 
39- GAUGCGUGUGGUCAGACCUAGC -61
Get sequence