| MirGeneDB ID | Aca-Mir-5397 |
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| Family name |
MIR-5397 (all species) |
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| Seed |
ACGCAGA |
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| Species |
Green anole lizard (Anolis carolinensis) |
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| MiRBase ID |
aca-mir-5397
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. carolinensis
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| Node of Origin (family) |
A. carolinensis
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Genome context
(anoCar2) |
2: 92804660-92804720 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UGGUUCUUGAGUUGUUCGCAGCUCUCAUGUUACGCAGAAGUUUGCUUCAUCAGGCUGAAUAUGCCCUGCCUGGUAAAGCCUUCUGCCUAACCUGCAAGCUUGCAAGCUUCUGCACAAAGUG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UGGUUCUUGAGUUGUUC- -| CU U C UUU C UGAAU
GC AGCU CA GUUA GCAGAAG GCUU AUCAGGC A
CG UCGA GU CAAU CGUCUUC CGAA UGGUCCG U
GUGAAACACGUCUUCGAA U^ AC C C --- A UCCCG
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Mature sequence |
Aca-Mir-5397_5p |
| mirBase accession | MIMAT0022004 |
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| Sequence |
0- UACGCAGAAGUUUGCUUCAUCAGGC -25
Get sequence
|
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| Star sequence |
Aca-Mir-5397_3p* |
| mirBase accession | MIMAT0022005 |
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| Sequence |
39- CUGGUAAAGCCUUCUGCCUAAC -61
Get sequence
|
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