| MirGeneDB ID | Aca-Mir-5399 |
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| Family name |
MIR-5399 (all species) |
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| Seed |
UGCAAGA |
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| Species |
Green anole lizard (Anolis carolinensis) |
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| MiRBase ID |
aca-mir-5399
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
A. carolinensis
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| Node of Origin (family) |
A. carolinensis
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Genome context
(anoCar2) |
3: 25386690-25386749 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UACAGGUGAAAAUCAUUGUUGGCCAGAAGACCAGAUUAUUUGUUGCUGUGCAAUUGUUUUGUAUAAAAUUGCAAGAGAAAUAGUCUGACAUUCUGACUUAUAAAAUAACAGCUGGAGUAU
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
UACAGGUGAAAAUCAUU--| U C GAC G GCUG GUUUU
GU GG CAGAA CAGAUUAUUU UU UGCAAUU \
UA UC GUCUU GUCUGAUAAA AG ACGUUAA G
UAUGAGGUCGACAAUAAAA^ U A ACA G A--- AAUAU
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
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| Star sequence |
Aca-Mir-5399_5p* |
| mirBase accession | MIMAT0022008 |
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| Sequence |
0- CCAGAUUAUUUGUUGCUGUGCAAUU -25
Get sequence
|
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| Mature sequence |
Aca-Mir-5399_3p |
| mirBase accession | MIMAT0022009 |
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| Sequence |
38- UUGCAAGAGAAAUAGUCUGACA -60
Get sequence
|
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