| MirGeneDB ID | Ami-Mir-1641 |
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| Family name |
MIR-1641 (all species) |
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| Seed |
GGGGAUU |
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| Species |
American alligator (Alligator mississippiensis) |
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| MiRBase ID |
ami-mir-1641
|
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| Paralogues |
|
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| Orthologues |
Cli-Mir-1641
Gga-Mir-1641
Tgu-Mir-1641
|
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| Node of Origin (locus) |
Archosauria
|
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| Node of Origin (family) |
Archosauria
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Genome context
(GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017713592.1: 17046845-17046903 [-]
UCSC
|
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Precursor
(pre-Mir +30nt flank) |
GUAAUAACAACCUCAAUGCAGGGCAUUUCCUGGGGAUUAAUGACUGUCUGGGGUCAUCAUCUCCUCCCAGUUAGUUAUUAAUCCCCAGGAAAUACUUUAUACCUUGAUCAUUAUUGCUU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUAAUAACAACCUCAAUGC--| C U GUCAUC
AGGG AUUUCCUGGGGAUUAAUGACUG CUGGG \
UUUC UAAAGGACCCCUAAUUAUUGAU GACCC A
UUCGUUAUUACUAGUUCCAUA^ A U UCCUCU
110 100 90 80 70 60 |
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| Deep sequencing |
|
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| 3' NTU |
Unknown
|
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| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
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| Mature sequence |
Ami-Mir-1641_5p (predicted) |
| mirBase accession | MIMAT0038317 |
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| Sequence |
0- UGGGGAUUAAUGACUGUCUGGG -22
Get sequence
|
|---|
| Star sequence |
Ami-Mir-1641_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
37- CAGUUAGUUAUUAAUCCCCAGG -59
Get sequence
|
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