MirGeneDB 2.1

MirGeneDB ID

Ami-Mir-192-P1

Family name MIR-192 (all species)
Seed UGACCUA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-215
Paralogues Ami-Mir-192-P2 
Orthologues Aca-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cli-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)
NW_017708560.1: 13838078-13838138 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-192-P1)
Mir-194-P1 NW_017708560.1: 13837764-13837819 [+] UCSC
Mir-192-P1 NW_017708560.1: 13838078-13838138 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AUACAUUAAUGAGAACUGUUGUGCAGGAAAAUGACCUAUGAAUUGACAGACUGUGUAUUCUAAGCUUGUCUGUCAUUUCUGUAGGCCAAUAUUCUGCACACCUUCACUGCUCUGAUUCCAA
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Structure
        10          20        30         40        50         
AUACAUUAAUGAGAACUGU--         AAA  A     -|  U        UGUGUAU 
                     UGUGCAGGA   UG CCUAU GAA UGACAGAC       U
                     ACACGUCUU   AC GGAUG CUU ACUGUCUG       C
AACCUUAGUCUCGUCACUUCC         AUA  C     U^  U        UUCGAAU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
 +
To
Mature sequence

Ami-Mir-192-P1_5p

mirBase accessionMIMAT0038240
Sequence
0- AUGACCUAUGAAUUGACAGACU -22
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Star sequence

Ami-Mir-192-P1_3p*

mirBase accessionMIMAT0038241
Sequence
38- UCUGUCAUUUCUGUAGGCCAAUA -61
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