Mir-194-P1

MirGeneDB ID

Ami-Mir-194-P1

Family name

MIR-194 (all species)

Seed

GUAACAG

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-194-1

Paralogues

Ami-Mir-194-P2

Orthologues

Aca-Mir-194-P1 Bta-Mir-194-P1 Cfa-Mir-194-P1 Cli-Mir-194-P1 Cmi-Mir-194-P1 Cpi-Mir-194-P1 Ebu-Mir-194-o1 Ete-Mir-194-P1 Gga-Mir-194-P1 Gja-Mir-194-P1 Hsa-Mir-194-P1 Lch-Mir-194-P1 Mml-Mir-194-P1 Mmu-Mir-194-P1 Mun-Mir-194-P1 Oan-Mir-194-P1 Ocu-Mir-194-P1 Pbv-Mir-194-P1 Pma-Mir-194-o1 Rno-Mir-194-P1 Spt-Mir-194-P1 Sto-Mir-194-P1 Tgu-Mir-194-P1 Xla-Mir-194-P1a Xla-Mir-194-P1b Xtr-Mir-194-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Vertebrata

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017708560.1: 13837764-13837819 [+] UCSC

Clustered miRNAs
(< 50kb from Mir-194-P1)

Mir-194-P1 NW_017708560.1: 13837764-13837819 [+] UCSC
Mir-192-P1 NW_017708560.1: 13838078-13838138 [+] UCSC

Precursor
(pre-Mir +30nt flank)

CGUUCAAGACUGACCAGCAGUACUUUCAAAUGUAACAGCAACUCCAUGUGGACUACGCUGACUUCCAGUGGAGAUGCUGUUACUUUUGACAGCCACUCACAGACAUGGAGCAGCUG

Get precursor sequence

Structure

        10         20         30        40        50        
CGUUCAAGACUGACCAGC-   A-| U     U         A      G    CUACG 
                   AGU  CU UCAAA GUAACAGCA CUCCAU UGGA     \
                   UCA  GA AGUUU CAUUGUCGU GAGGUG ACCU     C
GUCGACGAGGUACAGACAC   CC^ C     U         A      -    UCAGU 
    110       100        90        80        70         60