MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-205-P2

Family name MIR-205 (all species)
Seed CCUUCAU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-205b
Paralogues Ami-Mir-205-P4 
Orthologues Aca-Mir-205-P2  Cli-Mir-205-P2  Cmi-Mir-205-P2  Cpi-Mir-205-P2  Gga-Mir-205-P2  Gja-Mir-205-P2  Pbv-Mir-205-P2  Pma-Mir-205-o2  Spt-Mir-205-P2  Sto-Mir-205-P2  Tgu-Mir-205-P2 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017709854.1: 27055204-27055262 [+] UCSC
Precursor
(pre-Mir +30nt flank)
AAGGUGACUGUGGUCCAUGGCUUUCUGGUGCCCUUCAUUCCACCGGAAUCUGUAGGGAUCAAAACCAGAUUUCAGUGAAAUGAAGCCCCUCAGACGUGGAAUUCAACCCCUGGCUUUUU
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Structure
        10        20          30        40        50         
AAGGUGACUGUGGUCCAUGGCUU--|    UGCC       C   C        UAGGGA 
                         UCUGG    CUUCAUU CAC GGAAUCUG      \
                         AGACU    GAAGUAA GUG CUUUAGAC      U
UUUUUCGGUCCCCAACUUAAGGUGC^    CCCC       A   A        CAAAAC 
       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut +1 on the 5p arm, assuming an ancestral Dicer cut.
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ami-Mir-205-P2_5p
mirBase accessionMIMAT0038230
Sequence 
0- CCCUUCAUUCCACCGGAAUCUG -22
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Star sequence

Ami-Mir-205-P2_3p* (predicted)
mirBase accessionNone
Sequence 
37- GAUUUCAGUGAAAUGAAGCCCC -59
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