MirGeneDB ID | Ami-Mir-455 |
Family name |
MIR-455 (all species) |
Seed |
AUGUGCC |
Species |
American alligator (Alligator mississippiensis) |
MiRBase ID |
ami-mir-455
|
Paralogues |
|
Orthologues |
Aca-Mir-455
Bta-Mir-455
Cfa-Mir-455
Cli-Mir-455
Cmi-Mir-455
Cpi-Mir-455
Cpo-Mir-455
Dno-Mir-455
Dre-Mir-455-P1
Dre-Mir-455-P2
Ebu-Mir-455-v1
Ebu-Mir-455-v2
Ete-Mir-455
Gga-Mir-455
Gja-Mir-455
Gmo-Mir-455-P1
Gmo-Mir-455-P2
Hsa-Mir-455
Lch-Mir-455
Loc-Mir-455
Mal-Mir-455-P1
Mal-Mir-455-P2
Mdo-Mir-455
Mml-Mir-455
Mmu-Mir-455
Mun-Mir-455
Oan-Mir-455
Ocu-Mir-455
Pbv-Mir-455
Pma-Mir-455
Rno-Mir-455
Sha-Mir-455
Spt-Mir-455
Sto-Mir-455
Tgu-Mir-455
Tni-Mir-455-P1
Tni-Mir-455-P2
Xla-Mir-455-P3
Xla-Mir-455-P4
Xtr-Mir-455
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Vertebrata
|
Genome context (GCF_000281125.3_ASM28112v4_AMI_add) |
NW_017713629.1: 12996643-12996700 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
GCGGAGUUCUCAUGAUCCCUGGUGUGAGGGUAUGUGCCCUUGGACUACAUCGUGGAAGCCAGCACCAUGCAGUCCAUGGGCAUAUACACUUGCCUCAAGGUUUAUUUCAUCACGACUG
Get precursor sequence
|
Structure | 10 20 30 40 50
GCGGAGUUCUCAUGAUC- -| U UG G U A C UGGAA
CC UGG G AG GUAUGUGCCC UGGACU CAU G G
GG ACU C UC CAUAUACGGG ACCUGA GUA C C
GUCAGCACUACUUUAUUU A^ C GU A U C C ACGAC
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a range of Dicer cuts ranging from -1 to +4 relative to what is annotated here but this represents the highest mature form across vertebrates. |
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Ami-Mir-455_5p |
mirBase accession | MIMAT0038287 |
Sequence |
0- UAUGUGCCCUUGGACUACAUCG -22
Get sequence
|
Star sequence |
Ami-Mir-455_3p* |
mirBase accession | MIMAT0038288 |
Sequence |
36- AUGCAGUCCAUGGGCAUAUACA -58
Get sequence
|