MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-489-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-489
Paralogues Ami-Mir-489-v1 
Orthologues Aca-Mir-489-v2  Bta-Mir-489-v2  Cfa-Mir-489  Cja-Mir-489  Cli-Mir-489-v2  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v2  Eca-Mir-489  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v2  Hsa-Mir-489-v2  Laf-Mir-489  Lch-Mir-489  Loc-Mir-489-v2  Mal-Mir-489-v2  Mml-Mir-489-v2  Mmr-Mir-489  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pab-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v2  Tni-Mir-489-v2  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017712875.1: 7248484-7248545 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-489-v2)		 Mir-489-v2 NW_017712875.1: 7248484-7248545 [-] UCSC
Mir-489-v1 NW_017712875.1: 7248485-7248544 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUAACAGCUUUUUAUUGCGUGGUGGCUUGGUGGUCGUAUGUAUGACGUCAUUUACUUGGACUUUUAGGAGUGACAUCAUAUGUACGGCUGCUAAACUGCUGCAUGGGACAUCAUUUAAGCAG
Get precursor sequence
Structure
        10          20        30        40        50        60
AUAACAGCUUUUUAUUGC--|UG UG C    UG             C      UACUUGG 
                    G  G  G UUGG  GUCGUAUGUAUGA GUCAUU       A
                    C  C  C AAUC  CGGCAUGUAUACU CAGUGA       C
GACGAAUUUACUACAGGGUA^GU GU A    GU             A      GGAUUUU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Ami-Mir-489-v2_5p*
mirBase accessionMIMAT0038295
Sequence 
0- UGGUCGUAUGUAUGACGUCAUU -22
Get sequence
Mature sequence

Ami-Mir-489-v2_3p
mirBase accessionMIMAT0038296
Sequence 
40- UGACAUCAUAUGUACGGCUGCU -62
Get sequence