| MirGeneDB ID | Ava-Novel-5-P2b |
|---|
| Family name |
AVA-NOVEL-5 (all species) |
|---|
| Seed |
UACUAUU |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Novel-5-P1a
Ava-Novel-5-P1b
Ava-Novel-5-P2a
|
|---|
| Orthologues |
|
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
A. vaga
|
|---|
Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075493.1: 7275099-7275160 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AAAGCAAAUUUUAAAAGAAGCUCUCUAAUGUUACUAUUGUGUUAUACUGUAGUGGAAUUAAUGGAUGUCUACAGGAUCUCGCAGUAGUAUCAUAAGUGAUGCUUUUAAACGACUUCUAAUCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AAAGCAAAUUUUAAAAG- -| U A U UUAUA UGGAAUU
AAGC UC CU AUG UACUAUUGUG CUGUAG A
UUCG AG GA UAC AUGAUGACGC GACAUC A
UCUAAUCUUCAGCAAAUU U^ U A U UCUAG UGUAGGU
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ava-Novel-5-P2b_5p |
| mirBase accession | None |
|---|
| Sequence |
0- UUACUAUUGUGUUAUACUGUAG -22
Get sequence
|
|---|
| Star sequence |
Ava-Novel-5-P2b_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- ACAGGAUCUCGCAGUAGUAUCA -62
Get sequence
|
|---|
