| MirGeneDB ID | Ava-Novel-7-P2 |
|---|
| Family name |
AVA-NOVEL-7 (all species) |
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| Seed |
CAGGUUC |
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| Species |
Bdelloid rotifer (Adineta vaga) |
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| MiRBase ID |
|
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| Paralogues |
Ava-Novel-7-P1
|
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| Orthologues |
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| Node of Origin (locus) |
A. vaga
|
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| Node of Origin (family) |
A. vaga
|
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Genome context
(GCA_021613535.1_ASM2161353v1_AVA) |
CP075497.1: 8075054-8075121 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UCAGUUGGAAUGAACAUGGUUAUUCGUCGAACAGGUUCACAUUUGUUUGCUGAUGAUUAGUUUUAAUCGAAAUAAAGCAAGCAUUUGCGUAUCUGCACGACAUUAGCCACUAGUCGACAUUAAUAUCA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UCAGUUGGAAUGAACAU---| UUC AA UCA UU GAUGAUUAGUU
GGUUA GUCG CAGGU CA UGUUUGCU U
CCGAU CAGC GUCUA GU ACGAACGA U
ACUAUAAUUACAGCUGAUCA^ UA- AC UGC UU AAUAAAGCUAA
120 110 100 90 80 70 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Ava-Novel-7-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- ACAGGUUCACAUUUGUUUGCU -21
Get sequence
|
|---|
| Star sequence |
Ava-Novel-7-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
47- CAAGCAUUUGCGUAUCUGCAC -68
Get sequence
|
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