MirGeneDB 2.1

MirGeneDB ID

Bla-Mir-4876

Family name MIR-4876 (all species)
Seed UUACGUG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues
Orthologues Bfl-Mir-4876-P1  Bfl-Mir-4876-P2 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Branchiostoma
Genome context
(BraLan2)
Sc0000005: 2219876-2219936 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAAGACUGCAGACAUGCUCGCGGCCACAGGUCUCACCUGGUGCGUAACGCUGGUGUUAUGUCUCGCCUUACGUGCCACGUGAGGACUCUUGGACGUGAAGCUCUGUAUCCACGGCCAAA
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Structure
        10          20        30         40        50         
AGGAAGACUGCAGACAU-  -     G   CA   -|    C   UG     C  UGGUGU 
                  GC UCGCG CCA  GGU CUCAC UGG  CGUAA GC      U
                  CG AGUGC GGU  UCA GAGUG ACC  GCAUU CG      A
AAACCGGCACCUAUGUCU  A     A   UC   G^    C   GU     C  CUCUGU 
 .       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
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Star sequence

Bla-Mir-4876_5p*

mirBase accessionNone
Sequence
0- GGUCUCACCUGGUGCGUAACGC -22
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Mature sequence

Bla-Mir-4876_3p

mirBase accessionNone
Sequence
38- CUUACGUGCCACGUGAGGACUCU -61
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