MirGeneDB ID | Bpl-Novel-1 |
Family name |
BPL-NOVEL-1 (all species) |
Seed |
UAUCAGU |
Species |
Rotifer (Brachionus plicatilis) |
MiRBase ID |
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Paralogues |
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Orthologues |
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Node of Origin (locus) |
B. plicatilis
|
Node of Origin (family) |
B. plicatilis
|
Genome context (Bpl_ASM1027981) |
QEOQ01000206.1: 1063707-1063776 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
AAUUGUCGAACUCAAUACUGAGACUUGUUCCAGUGGUACAGCGCUGAUUAACAGUUGUAAUAUGCUGACUAAUUUCUGUAUCAGUAGCUCUACUACUGAAUCAAGCUCAGUUCUGAUCAUCUUAUCGGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAUUGUCGAACUCAAUA---| A UUC C - UA UUGUAAUAUG
CUGAG CUUG CAGUGGUA AGC GCUGAU ACAG \
GACUC GAAC GUCAUCAU UCG UGACUA UGUC C
ACGGCUAUUCUACUAGUCUU^ - UAA C A -- UUUAAUCAGU
. 120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Bpl-Novel-1_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CAGUGGUACAGCGCUGAUUAACAG -24
Get sequence
|
Mature sequence |
Bpl-Novel-1_3p |
mirBase accession | None |
Sequence |
47- GUAUCAGUAGCUCUACUACUGAA -70
Get sequence
|