MirGeneDB ID | Bta-Mir-1247 |
Family name |
MIR-1247 (all species) |
Seed |
CCCGUCC |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-1247
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Paralogues |
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Orthologues |
Cfa-Mir-1247
Cpo-Mir-1247
Dno-Mir-1247
Ete-Mir-1247
Hsa-Mir-1247
Mml-Mir-1247
Mmu-Mir-1247
Ocu-Mir-1247
Rno-Mir-1247
|
Node of Origin (locus) |
Eutheria
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Node of Origin (family) |
Eutheria
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Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037348.1: 66493377-66493434 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
UCGGCCGGCGCAGCCCCGGCCGCCGGGCGCACCCGUCCCGUGCGUCCCCGGACGUCGCUGUCUGCCCCGGGAACGUCGGGACUGGAGCGCCCGCGCUGAGCCACCUUCACCGACCCAG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCGGCCGGCGCAGCCCCGGCC- -| A C U C ACGUCGC
GC CGGGCGC CC GUCCCG GCGU CCCGG \
CG GCCCGCG GG CAGGGC UGCA GGGCC U
GACCCAGCCACUUCCACCGAGU C^ A U - A CCGUCUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Mature sequence |
Bta-Mir-1247_5p |
mirBase accession | MIMAT0025549 |
Sequence |
0- ACCCGUCCCGUGCGUCCCCGGA -22
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-1247-5p
|
Star sequence |
Bta-Mir-1247_3p* |
mirBase accession | MIMAT0025550 |
Sequence |
37- CGGGAACGUCGGGACUGGAGC -58
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-1247-3p
|