Mir-154-P20

MirGeneDB ID

Bta-Mir-154-P20

Family name

MIR-154 (all species)

Seed

GAGUAUU

Species

Cow (Bos taurus)

MiRBase ID

bta-mir-496

Paralogues

Bta-Mir-154-P1 Bta-Mir-154-P2-v1 Bta-Mir-154-P2-v2 Bta-Mir-154-P3a-v1 Bta-Mir-154-P3a-v2 Bta-Mir-154-P3b Bta-Mir-154-P3c Bta-Mir-154-P4a Bta-Mir-154-P4b Bta-Mir-154-P5 Bta-Mir-154-P6 Bta-Mir-154-P7 Bta-Mir-154-P8 Bta-Mir-154-P9 Bta-Mir-154-P10 Bta-Mir-154-P12 Bta-Mir-154-P13 Bta-Mir-154-P14 Bta-Mir-154-P15 Bta-Mir-154-P16 Bta-Mir-154-P17 Bta-Mir-154-P18 Bta-Mir-154-P19 Bta-Mir-154-P21 Bta-Mir-154-P22 Bta-Mir-154-P23 Bta-Mir-154-P24 Bta-Mir-154-P25 Bta-Mir-154-P26 Bta-Mir-154-P28 Bta-Mir-154-P29 Bta-Mir-154-P30 Bta-Mir-154-P31 Bta-Mir-154-P32 Bta-Mir-154-P33 Bta-Mir-154-P36 Bta-Mir-154-P37

Orthologues

Cfa-Mir-154-P20 Cpo-Mir-154-P20-v1 Cpo-Mir-154-P20-v2 Dno-Mir-154-P20-v1 Dno-Mir-154-P20-v2 Ete-Mir-154-P20-v1 Ete-Mir-154-P20-v2 Hsa-Mir-154-P20-v1 Hsa-Mir-154-P20-v2 Mml-Mir-154-P20-v1 Mml-Mir-154-P20-v2 Mmu-Mir-154-P20-v1 Mmu-Mir-154-P20-v2 Ocu-Mir-154-P20-v1 Ocu-Mir-154-P20-v2 Rno-Mir-154-P20-v1 Rno-Mir-154-P20-v2

Node of Origin (locus)

Eutheria

Node of Origin (family)

Eutheria

Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)

NC_037348.1: 65949538-65949591 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-154-P20)

Mir-154-P7 NC_037348.1: 65912523-65912581 [+] UCSC Ensembl
Mir-154-P13 NC_037348.1: 65913750-65913805 [+] UCSC Ensembl
Mir-154-P2-v1 NC_037348.1: 65914212-65914266 [+] UCSC Ensembl
Mir-154-P2-v2 NC_037348.1: 65914213-65914265 [+] UCSC Ensembl
Mir-154-P8 NC_037348.1: 65915443-65915499 [+] UCSC Ensembl
Mir-154-P37 NC_037348.1: 65915604-65915659 [+] UCSC Ensembl
Mir-154-P30 NC_037348.1: 65915956-65916011 [+] UCSC Ensembl
Mir-154-P3a-v2 NC_037348.1: 65916120-65916175 [+] UCSC Ensembl
Mir-154-P3a-v1 NC_037348.1: 65916120-65916175 [+] UCSC Ensembl
Mir-154-P26 NC_037348.1: 65916418-65916475 [+] UCSC Ensembl
Mir-154-P4a NC_037348.1: 65917157-65917214 [+] UCSC Ensembl
Mir-154-P4b NC_037348.1: 65917467-65917526 [+] UCSC Ensembl
Mir-154-P18 NC_037348.1: 65920329-65920384 [+] UCSC Ensembl
Mir-154-P29 NC_037348.1: 65920674-65920729 [+] UCSC Ensembl
Mir-154-P22 NC_037348.1: 65922475-65922533 [+] UCSC Ensembl
Mir-154-P19 NC_037348.1: 65923887-65923943 [+] UCSC Ensembl
Mir-154-P33 NC_037348.1: 65925899-65925954 [+] UCSC Ensembl
Mir-376-P4 NC_037348.1: 65928963-65929020 [+] UCSC Ensembl
Mir-376-P3 NC_037348.1: 65929334-65929391 [+] UCSC Ensembl
Mir-154-P23 NC_037348.1: 65929490-65929545 [+] UCSC Ensembl
Mir-376-P2 NC_037348.1: 65929716-65929773 [+] UCSC Ensembl
Mir-376-P1 NC_037348.1: 65930080-65930137 [+] UCSC Ensembl
Mir-154-P28 NC_037348.1: 65932020-65932079 [+] UCSC Ensembl
Mir-3956-v1 NC_037348.1: 65932749-65932833 [+] UCSC Ensembl
Mir-3956-v2 NC_037348.1: 65932750-65932832 [+] UCSC Ensembl
Mir-154-P9 NC_037348.1: 65933715-65933777 [+] UCSC Ensembl
Mir-154-P17 NC_037348.1: 65934207-65934264 [+] UCSC Ensembl
Mir-154-P21 NC_037348.1: 65935015-65935079 [+] UCSC Ensembl
Mir-544 NC_037348.1: 65937023-65937080 [+] UCSC Ensembl
Mir-154-P24 NC_037348.1: 65937984-65938043 [+] UCSC Ensembl
Mir-154-P31 NC_037348.1: 65940135-65940188 [+] UCSC Ensembl
Mir-154-P16 NC_037348.1: 65940523-65940580 [+] UCSC Ensembl
Mir-154-P10 NC_037348.1: 65943535-65943592 [+] UCSC Ensembl
Mir-134 NC_037348.1: 65943909-65943971 [+] UCSC Ensembl
Mir-154-P15 NC_037348.1: 65944610-65944668 [+] UCSC Ensembl
Mir-154-P1 NC_037348.1: 65948700-65948757 [+] UCSC Ensembl
Mir-154-P32 NC_037348.1: 65949014-65949074 [+] UCSC Ensembl
Mir-154-P20 NC_037348.1: 65949538-65949591 [+] UCSC Ensembl
Mir-154-P6 NC_037348.1: 65951143-65951202 [+] UCSC Ensembl
Mir-541 NC_037348.1: 65953000-65953065 [+] UCSC Ensembl
Mir-3957 NC_037348.1: 65953387-65953445 [+] UCSC Ensembl
Mir-154-P36 NC_037348.1: 65953907-65953960 [+] UCSC Ensembl
Mir-154-P14 NC_037348.1: 65954052-65954107 [+] UCSC Ensembl
Mir-154-P5 NC_037348.1: 65954195-65954250 [+] UCSC Ensembl
Mir-154-P12 NC_037348.1: 65954526-65954581 [+] UCSC Ensembl
Mir-154-P3c NC_037348.1: 65955040-65955095 [+] UCSC Ensembl
Mir-154-P25 NC_037348.1: 65955342-65955398 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCCAGCAUCCGAGUCGGGUACUCGAAUGGAGGUUGUCCAUGGUGUGUUCAUUUUAUUUAUGAUGAGUAUUACAUGGCCAAUCUCCUUUCAGUACUAAAUUCUUCAUGGGAAGAC

Get precursor sequence

Structure

        10           20        30        40        50      
GCCAGCAUCCGAGUCGG---|    C   U        U     GU         UUA 
                    GUACU GAA GGAGGUUG CCAUG  GUGUUCAUU   U
                    CAUGA CUU CCUCUAAC GGUAC  UAUGAGUAG   U
CAGAAGGGUACUUCUUAAAU^    -   U        C     AU         UAU 
  110       100        90         80        70        60

Deep sequencing

Go to detailed chart

Comment

Cow and dog do not express the second version that the other eutherians express.

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Ad	Cd	Fe	Bo	Br	Ce	Co	Co	De	He	Hy	Ir	Ki	La	Lo	No	Op	Or	Pe	Re	Su	Te

Star sequence

Bta-Mir-154-P20_5p* (predicted)

mirBase accession

None

Sequence

0- GGUUGUCCAUGGUGUGUUCAUU -22

Get sequence

Mature sequence

Bta-Mir-154-P20_3p

mirBase accession

MIMAT0009336

Sequence

32- UGAGUAUUACAUGGCCAAUCUC -54

Get sequence

Proposed targets

TargetScanVert: bta-miR-496