MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-30-P2b

Family name MIR-30 (all species)
Seed GUAAACA
Species Cow (Bos taurus)
MiRBase ID bta-mir-30f
Paralogues Bta-Mir-30-P1a  Bta-Mir-30-P1b  Bta-Mir-30-P1d  Bta-Mir-30-P2a  Bta-Mir-30-P2d 
Orthologues Aca-Mir-30-P2b  Ami-Mir-30-P2b  Cfa-Mir-30-P2b  Cja-Mir-30-P2b  Cli-Mir-30-P2b  Cmi-Mir-30-P2b  Cpi-Mir-30-P2b  Cpo-Mir-30-P2b  Dno-Mir-30-P2b  Dre-Mir-30-P2b  Eca-Mir-30-P2b  Ete-Mir-30-P2b  Gga-Mir-30-P2b  Gja-Mir-30-P2b  Gmo-Mir-30-P2b  Hsa-Mir-30-P2b  Laf-Mir-30-P2b  Lch-Mir-30-P2b  Loc-Mir-30-P2b  Mal-Mir-30-P2b  Mdo-Mir-30-P2b  Mml-Mir-30-P2b  Mmr-Mir-30-P2b  Mmu-Mir-30-P2b  Mun-Mir-30-P2b  Neu-Mir-30-P2b  Oan-Mir-30-P2b  Ocu-Mir-30-P2b  Pab-Mir-30-P2b  Pbv-Mir-30-P2b  Rno-Mir-30-P2b  Sha-Mir-30-P2b  Spt-Mir-30-P2b  Sto-Mir-30-P2b  Tgu-Mir-30-P2b  Tni-Mir-30-P2b  Xla-Mir-30-P2b1  Xla-Mir-30-P2b2  Xtr-Mir-30-P2b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037336.1: 10494828-10494889 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-30-P2b)		 Mir-30-P2b NC_037336.1: 10494828-10494889 [-] UCSC Ensembl
Mir-30-P1b NC_037336.1: 10532174-10532236 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGCCCCAGAGAGCACUGAGGGCCAGAUACUGUAAACACCCUACACUCUCAGCUGUGCACAGUGAGAAAGCUGGGAGAAGGCUGUUUACUCUCUCUGCCUUGGAAAUCAACUAGAGAAGCAG
Get precursor sequence
Structure
        10           20        30        40        50        60 
CCGCCCCAGAGAGCACUG---|    C   UACU       C   ACA         GUGCAC 
                     AGGGC AGA    GUAAACA CCU   CUCUCAGCU      A
                     UUCCG UCU    CAUUUGU GGA   GAGGGUCGA      G
GACGAAGAGAUCAACUAAAGG^    -   CUCU       C   A--         AAGAGU 
120       110       100         90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-30-P2b_5p
mirBase accessionMIMAT0009282
Sequence 
0- UGUAAACACCCUACACUCUCAGCU -24
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Proposed targets TargetScanVert: bta-miR-30f
Star sequence

Bta-Mir-30-P2b_3p*
mirBase accessionNone
Sequence 
40- CUGGGAGAAGGCUGUUUACUCU -62
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