| MirGeneDB ID | Bta-Mir-320-P1b |
|---|
| Family name |
MIR-320 (all species) |
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| Seed |
AAAGCUG |
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| Species |
Cow (Bos taurus) |
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| MiRBase ID |
bta-mir-320a-2
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| Paralogues |
Bta-Mir-320-P1a
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| Orthologues |
Cfa-Mir-320
Cpo-Mir-320
Dno-Mir-320
Ete-Mir-320
Hsa-Mir-320-P1
Mml-Mir-320-P1
Mmu-Mir-320
Ocu-Mir-320
Rno-Mir-320
|
|---|
| Node of Origin (locus) |
B. taurus
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| Node of Origin (family) |
Eutheria
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Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037335.1: 69558101-69558154 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UAUUUAUCCCGCGGCGUCUCGCUCCCCUCCGCCUUCUCUUCCCGGUUCUUCCCGGAGUCGGGAAAAGCUGGGUUGAGAGGGCGAAAAAGGAAGAGGGGAAGGGUCUAGGGGAGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
UAUUUAUCCCGCGGCGU--| GC CCUC- UU C CGG
CUC UCC CGCCUUCUC CCCGGUU UUCC A
GAG AGG GCGGGAGAG GGGUCGA AAGG G
GGAGGGGAUCUGGGAAGGG^ A- AAAAA UU A GCU
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
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| Comment | As a non-canonical (Group 3, Kim et al. 2016) Drosha-independent 5' capped miRNA few star reads are cloned and sequenced. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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| Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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| Star sequence |
Bta-Mir-320-P1b_5p* |
| mirBase accession | None |
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| Sequence |
0- GCCUUCUCUUCCCGGUUCUUCC -22
Get sequence
|
|---|
| Mature sequence |
Bta-Mir-320-P1b_3p |
| mirBase accession | MIMAT0003534 |
|---|
| Sequence |
32- AAAAGCUGGGUUGAGAGGGCGA -54
Get sequence
|
|---|
| Proposed targets |
TargetScanVert: bta-miR-320a
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