MirGeneDB 2.1

MirGeneDB ID

Bta-Mir-362-P5

Family name MIR-362 (all species)
Seed UGCACCU
Species Cow (Bos taurus)
MiRBase ID bta-mir-500
Paralogues Bta-Mir-362-P1  Bta-Mir-362-P2-v1  Bta-Mir-362-P2-v2  Bta-Mir-362-P2-v3  Bta-Mir-362-P4  Bta-Mir-362-P6 
Orthologues Cfa-Mir-362-P5  Cpo-Mir-362-P5  Dno-Mir-362-P5  Hsa-Mir-362-P5  Mml-Mir-362-P5 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)
NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-362-P5)
Mir-188-P2 NC_037357.1: 87724748-87724806 [+] UCSC Ensembl
Mir-188-P1 NC_037357.1: 87725070-87725129 [+] UCSC Ensembl
Mir-362-P6 NC_037357.1: 87732068-87732125 [+] UCSC Ensembl
Mir-362-P2-v1 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v3 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P2-v2 NC_037357.1: 87736191-87736252 [+] UCSC Ensembl
Mir-362-P1 NC_037357.1: 87736674-87736732 [+] UCSC Ensembl
Mir-362-P5 NC_037357.1: 87737938-87737999 [+] UCSC Ensembl
Mir-188-P3 NC_037357.1: 87740093-87740151 [+] UCSC Ensembl
Mir-362-P4 NC_037357.1: 87742037-87742095 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CUGGAAUCUUCUGUCCUGGCUCCCCCUCUCUAAUCCUUGCUACCUGGGUGAGAGUGCUUUCUGAAUGCAAUGCACCUGGGCAAGGAUUCUGAGAGAGGGAGCACCAUCUUCGCCUAGAACAA
Get precursor sequence
Structure
        10          20        30         40        50         60 
CUGGAAUCUUCUGUCCUG--      C     U-|        UAC UG    AGA-  GCUUU 
                    GCUCCC CUCUC  AAUCCUUGC   C  GGUG    GU     \
                    CGAGGG GAGAG  UUAGGAACG   G  CCAC    CG     C
AACAAGAUCCGCUUCUACCA      A     UC^        --- GU    GUAA  UAAGU 
120       110       100        90        80           70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-362-P5_5p*

mirBase accessionMIMAT0009337
Sequence
0- UAAUCCUUGCUACCUGGGUGAGAGU -25
Get sequence
Proposed targets TargetScanVert: bta-miR-500
Mature sequence

Bta-Mir-362-P5_3p

mirBase accessionNone
Sequence
39- AUGCACCUGGGCAAGGAUUCUGA -62
Get sequence