MirGeneDB 2.1
MirGeneDB ID

Bta-Mir-489-v2

Family name MIR-489 (all species)
Seed GACAUCA
Species Cow (Bos taurus)
MiRBase ID bta-mir-489
Paralogues Bta-Mir-489-v1  Bta-Mir-489-v3 
Orthologues Aca-Mir-489-v2  Ami-Mir-489-v2  Cfa-Mir-489  Cli-Mir-489-v2  Cpi-Mir-489-v2  Dno-Mir-489  Dre-Mir-489-v2  Gga-Mir-489-v2  Gja-Mir-489  Gmo-Mir-489-v2  Hsa-Mir-489-v2  Lch-Mir-489  Loc-Mir-489-v2  Mal-Mir-489-v2  Mml-Mir-489-v2  Mmu-Mir-489  Mun-Mir-489  Ocu-Mir-489  Pbv-Mir-489  Rno-Mir-489  Sha-Mir-489  Spt-Mir-489  Tgu-Mir-489-v2  Tni-Mir-489-v2  Xtr-Mir-489-v2 
Node of Origin (locus) Osteichthyes
Node of Origin (family) Osteichthyes
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037331.1: 10822878-10822939 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-489-v2)		 Mir-653 NC_037331.1: 10822218-10822278 [-] UCSC Ensembl
Mir-489-v2 NC_037331.1: 10822878-10822939 [-] UCSC Ensembl
Mir-489-v1 NC_037331.1: 10822879-10822938 [-] UCSC Ensembl
Mir-489-v3 NC_037331.1: 10822879-10822938 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCGGACUACAGCUGUCAGUGGCAGCUUGGUGGUCGUAUGUGUGGCGCCAUCUACUGGAACGUUUAGGAGUGACAUCACAUAUAUGGCGACUAAACUGCUGCAUAGGACAACAAUUAACAGG
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Structure
        10          20        30        40           50          
GGCGGACUACAGCUGUCA-- UG    C     G             ---|  CA  UACUGGA 
                    G  GCAG UUGGU GUCGUAUGUGUGG   CGC  UC       \
                    C  CGUC AAUCA CGGUAUAUACACU   GUG  AG       A
GGACAAUUAACAACAGGAUA GU    A     G             ACA^  --  GAUUUGC 
120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ad Cd Fe Bo Br Ce Co Co De He Hy Ir Ki La Lo No Op Or Pe Re Su Te
Star sequence

Bta-Mir-489-v2_5p* (predicted)
mirBase accessionNone
Sequence 
0- UGGUCGUAUGUGUGGCGCCAUC -22
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Mature sequence

Bta-Mir-489-v2_3p
mirBase accessionMIMAT0009942
Sequence 
40- UGACAUCACAUAUAUGGCGACU -62
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Proposed targets TargetScanVert: bta-miR-489