MirGeneDB ID | Bta-Mir-506-P1 |
Family name |
MIR-506 (all species) |
Seed |
ACUUAGG |
Species |
Cow (Bos taurus) |
MiRBase ID |
|
Paralogues |
Bta-Mir-506-P2f
Bta-Mir-506-P2g
Bta-Mir-506-P2h
Bta-Mir-506-P3
Bta-Mir-506-P6
|
Orthologues |
Cfa-Mir-506-P1
Cpo-Mir-506-o1
Cpo-Mir-506-P1
Dno-Mir-506-P1
Hsa-Mir-506-P1
Mml-Mir-506-P1
Mmu-Mir-506-P1
Ocu-Mir-506-P1
Rno-Mir-506-P1
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037357.1: 29994350-29994407 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCACCUUCACCUGUGUUUUGCUCAGUGCCCUACUUAGGAAGGCGUUAUUCACUUAUAUUGAAUUUUGAAAGGCAUCUCUCUGAGUGUAGCAAUGUGUAAUAUGAACAACAUUUGAGGU
Get precursor sequence
|
Structure | 10 20 30 40 50
CCACCUUCACCUGUGUU--| U G CC GA GC UA CUUAUA
UUGC CA UGC UACUUAG AG GU UUCA U
AAUG GU ACG GUGAGUC UC CG AAGU U
UGGAGUUUACAACAAGUAU^ U A AU UC UA GA UUUAAG
110 100 90 80 70 60 |
Deep sequencing |
|
3' NTU |
Unknown
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
|
|
|
Mature sequence |
Bta-Mir-506-P1_5p (predicted) |
mirBase accession | None |
Sequence |
0- UACUUAGGAAGGCGUUAUUCA -21
Get sequence
|
Star sequence |
Bta-Mir-506-P1_3p* (predicted) |
mirBase accession | None |
Sequence |
37- AAAGGCAUCUCUCUGAGUGUA -58
Get sequence
|