MirGeneDB ID | Bta-Mir-506-P6 |
Family name |
MIR-506 (all species) |
Seed |
UCAUAGG |
Species |
Cow (Bos taurus) |
MiRBase ID |
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Paralogues |
Bta-Mir-506-P1
Bta-Mir-506-P2f
Bta-Mir-506-P2g
Bta-Mir-506-P2h
Bta-Mir-506-P3
|
Orthologues |
Cpo-Mir-506-o6
Cpo-Mir-506-P6
Ete-Mir-506-P6e
Ete-Mir-506-P6f
Hsa-Mir-506-P6a1
Hsa-Mir-506-P6a2
Hsa-Mir-506-P6b
Hsa-Mir-506-P6c
Mml-Mir-506-P6a
Mml-Mir-506-P6b1
Mml-Mir-506-P6b2
Mml-Mir-506-P6c1
Mml-Mir-506-P6c2
Ocu-Mir-506-P6
Rno-Mir-506-P6
|
Node of Origin (locus) |
Eutheria
|
Node of Origin (family) |
Eutheria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037357.1: 29980078-29980135 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCACACUAAGCCAUUCAGUGUACAGUGCCUUUCAUAGGAAGGUGUCAUUCAUGUGGUCUACAAUUUGAAUGCCACUUUUUUGUGAAGAGUAAUGUACAACAUGCAGGGCAUGGUGGUA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCACACUAAGCCAUUCAG--| G C U UGUGGU
UGUACA UGC UUUCAUAGGAAGGUG CAUUCA C
ACAUGU AUG GAAGUGUUUUUUCAC GUAAGU U
AUGGUGGUACGGGACGUACA^ A A C UUAACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UGUG in loop |
Tissue expression
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Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
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Mature sequence |
Bta-Mir-506-P6_5p |
mirBase accession | None |
Sequence |
0- UUCAUAGGAAGGUGUCAUUCA -21
Get sequence
|
Star sequence |
Bta-Mir-506-P6_3p* |
mirBase accession | None |
Sequence |
37- AAUGCCACUUUUUUGUGAAGA -58
Get sequence
|