| MirGeneDB ID | Cbr-Mir-62 |
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| Family name |
MIR-62 (all species) |
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| Seed |
GAUAUGU |
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| Species |
Roundworm (Caenorhabditis briggsae) |
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| MiRBase ID |
cbr-mir-62
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| Paralogues |
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| Orthologues |
Cel-Mir-62
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| Node of Origin (locus) |
Caenorhabditis
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| Node of Origin (family) |
Caenorhabditis
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Genome context
(CB4) |
X: 14298386-14298443 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAUCGACCCUUGCAACUCGGCUAUUAUAAGGUGGGUUAGAUCCCAUAUCCUUCCGCUUGAUGGAAAUGAUAUGUAAUCUAGCUUACAGGUCUCUCAACAUCUCCAAGACGGUGCUACU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CAUCGACCCUUGCAACUCGGCUAUUAUAAG--| CC CUUCCGCU
GUGGGUUAGAU CAUAUC U
CAUUCGAUCUA GUAUAG G
UCAUCGUGGCAGAACCUCUACAACUCUCUGGA^ AU UAAAGGUA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| Comment | Mir-62 is a conserved mirtron cut at both ends by the spliceosome. |
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| 3' NTU |
No
|
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| Motifs | No |
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Tissue expression
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02 |
03 |
04 |
05 |
06 |
07 |
08 |
09 |
10 |
11 |
12 |
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14 |
15 |
16 |
Cb |
Ea |
Ma |
Yo |
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| Star sequence |
Cbr-Mir-62_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- GUGGGUUAGAUCCCAUAUCCUU -22
Get sequence
|
|---|
| Mature sequence |
Cbr-Mir-62_3p |
| mirBase accession | MIMAT0001309 |
|---|
| Sequence |
36- UGAUAUGUAAUCUAGCUUACAG -58
Get sequence
|
|---|
