MirGeneDB 2.1

MirGeneDB ID

Cfa-Mir-28-P3

Family name MIR-28 (all species)
Seed AGGAGCU
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-708
Paralogues Cfa-Mir-28-P1  Cfa-Mir-28-P2 
Orthologues Bta-Mir-28-P3  Cpo-Mir-28-P3  Dno-Mir-28-P3  Ete-Mir-28-P3  Hsa-Mir-28-P3  Mml-Mir-28-P3  Mmu-Mir-28-P3  Ocu-Mir-28-P3  Rno-Mir-28-P3 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)
chr21: 19542577-19542645 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGCUGUGUGUGAAAUGGUAACUGCCCUCAAGGAGCUUACAAUCUAGCUGGGGGUGAACGGCUUGCACAUGAACGCAACUAGACUGUGAGCUUCUAGAGGGCAGGGACCUUACCCUAGUCAUCUCUCU
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Structure
        10          20        30        40        50        60    
ACUGCUGUGUGUGAAAU--|  AA        A           A     C  GGGGUGAACGGC 
                   GGU  CUGCCCUC AGGAGCUUACA UCUAG UG            \
                   CCA  GACGGGAG UCUUCGAGUGU AGAUC AC            U
UCUCUCUACUGAUCCCAUU^  GG        A           C     A  GCAAGUACACGU 
       120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-28-P3_5p

mirBase accessionMIMAT0006643
Sequence
0- AAGGAGCUUACAAUCUAGCUGGG -23
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Proposed targets TargetScanVert: cfa-miR-708
miRDB: MIMAT0006643
Star sequence

Cfa-Mir-28-P3_3p*

mirBase accessionNone
Sequence
46- CAACUAGACUGUGAGCUUCUAGA -69
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