MirGeneDB 2.1
MirGeneDB ID

Cfa-Mir-330-v2

Family name MIR-330 (all species)
Seed CAAAGCA
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-330
Paralogues Cfa-Mir-330-v1 
Orthologues Bta-Mir-330-v2  Cpo-Mir-330-v2  Dno-Mir-330-v2  Ete-Mir-330-v2  Hsa-Mir-330-v2  Mml-Mir-330-v2  Mmu-Mir-330-v2  Ocu-Mir-330-v2  Rno-Mir-330-v2 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(canFam3_add)		 chr1: 109922155-109922218 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-330-v2)		 Mir-330-v1 chr1: 109922155-109922218 [+] UCSC Ensembl
Mir-330-v2 chr1: 109922155-109922218 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCUGUGUGAUCUUUGGCGAUCACUGCCUCUCUGGGCCUGUGUCUUAGGCUCUGCAAGAUCAACCGAGCAAAGCACACGGCCUGCAGAGAGGCAGCGCUCCGCUCCUUACGCGGCCCCCAUU
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Structure
        10         20         30          40         50        60 
CGUGCUGUGUGAUCUUU-    AUCA-           --    -|   U   AG    UGCAAG 
                  GGCG     CUGCCUCUCUG  GGCC UGUG CUU  GCUC      \
                  UCGC     GACGGAGAGAC  CCGG ACAC GAA  CGAG      A
UUACCCCCGGCGCAUUCC    CUCGC           GU    C^   -   A-    CCAACU 
  120       110       100        90        80          70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Mir-330-v2_5p*
mirBase accessionMIMAT0009893
Sequence 
0- UCUCUGGGCCUGUGUCUUAGGCUC -24
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Proposed targets TargetScanVert: cfa-miR-330
miRDB: MIMAT0009893
Mature sequence

Cfa-Mir-330-v2_3p
mirBase accessionNone
Sequence 
39- GCAAAGCACACGGCCUGCAGAGAGG -64
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