MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-875

Family name MIR-875 (all species)
Seed AUACCUC
Species Dog (Canis familiaris)
MiRBase ID cfa-mir-875
Paralogues
Orthologues Aca-Mir-875  Ami-Mir-875  Bta-Mir-875  Cja-Mir-875  Cli-Mir-875  Cpi-Mir-875  Ebu-Mir-875  Eca-Mir-875  Ete-Mir-875  Gja-Mir-875  Hsa-Mir-875  Laf-Mir-875  Mdo-Mir-875  Mml-Mir-875  Mmr-Mir-875  Mmu-Mir-875  Mun-Mir-875  Oan-Mir-875  Ocu-Mir-875  Pab-Mir-875  Pbv-Mir-875  Pma-Mir-875  Rno-Mir-875  Sha-Mir-875  Spt-Mir-875 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(canFam3_add)		 chr13: 1539088-1539144 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-875)		 Mir-599 chr13: 1538941-1538999 [-] UCSC Ensembl
Mir-875 chr13: 1539088-1539144 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAUUGCAUAAUUCUUCAAGUUUUGUGGUACUAUACCUCAGUUUUAUCAGGUGUUCUUUAAAAUCACCUGGAAAUACUGAGGUUGUGUUUCACUGAACAUGAGCUUCAUGACUUCUAU
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Structure
        10          20        30        40        50        
UAUUGCAUAAUUCUUCAA--|   U    U  UAU        U  A       UUCUU 
                    GUUU GUGG AC   ACCUCAGU UU UCAGGUG     \
                    CAAG CACU UG   UGGAGUCA AA GGUCCAC     U
UAUCUUCAGUACUUCGAGUA^   U    U  UGU        U  A       UAAAA 
     110       100        90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-875_5p
mirBase accessionMIMAT0009931
Sequence 
0- UAUACCUCAGUUUUAUCAGGUG -22
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Proposed targets TargetScanVert: cfa-miR-875
miRDB: MIMAT0009931
Star sequence

Cfa-Mir-875_3p* (predicted)
mirBase accessionNone
Sequence 
35- CCUGGAAAUACUGAGGUUGUGU -57
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