MirGeneDB 2.1

MirGeneDB ID

Cfa-Novel-12

Family name CFA-NOVEL-12 (all species)
Seed CUGAGAG
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr3: 15387060-15387122 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGCAAGUGUAGAACAAGGGUGCAGAAUUUAAGGAGUCAGUCACUCUCAGGGUUUUGUAGCAUUUGUAGGACCCUGAGAGUGAGUACCUCCUGAAAUUUUUCAUCCUAGGCACCUCUUUAAUCU
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Structure
        10          20        30        40        50        60 
UGCAAGUGUAGAACAAG--|   C       A     UCAG             UUUGUAGC 
                   GGUG AGAAUUU AGGAG    UCACUCUCAGGGU        \
                   CUAC UUUUAAA UCCUC    AGUGAGAGUCCCA        A
UCUAAUUUCUCCACGGAUC^   U       G     CAUG             GGAUGUUU 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Star sequence

Cfa-Novel-12_5p*

mirBase accessionNone
Sequence
0- AGGAGUCAGUCACUCUCAGGGU -22
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Mature sequence

Cfa-Novel-12_3p

mirBase accessionNone
Sequence
41- CCUGAGAGUGAGUACCUCCUGA -63
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