| MirGeneDB ID | Cfa-Novel-16 |
|---|
| Family name |
CFA-NOVEL-16 (all species) |
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| Seed |
ACGUUGG |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chrX: 37879009-37879064 [-]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGGGCCUCCGGAGCUCAGGCUCACCUCCAGCUCCGGGACUCGCCACCGUGUUCGUUGUCAAGAGAAACGUUGGCAGCCCCAGAUCUGGAUGUCAGCAGCACCCUGGCCUGACUGCU
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGGGCCUCCGGAGCUCAG--| C C C C A C C G GUUG
GCU AC UCCAG UC GGG CU GCCA CGU UUC U
CGA UG AGGUC AG CCC GA CGGU GCA AAG C
UCGUCAGUCCGGUCCCACGA^ C U U A C - U - AGAA
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | No |
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Tissue expression
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| An |
An |
An |
Bl |
Ce |
Co |
He |
Hi |
Hi |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Star sequence |
Cfa-Novel-16_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- CUCCGGGACUCGCCACCGUGUUC -23
Get sequence
|
|---|
| Mature sequence |
Cfa-Novel-16_3p |
| mirBase accession | None |
|---|
| Sequence |
35- AACGUUGGCAGCCCCAGAUCU -56
Get sequence
|
|---|
