MirGeneDB 2.1

MirGeneDB ID

Cfa-Novel-18

Family name CFA-NOVEL-18 (all species)
Seed ACUGGAG
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. familiaris
Node of Origin (family) C. familiaris
Genome context
(canFam3_add)
chr7: 449942-450014 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CGUCCGCCGGGGGCUCAGCAGGUGCUUGGUGACUGGAGGACUUAGGUUGCACGUGCGGUGACGGGGCCGCCUUCUAAAUCGUGCGCCUGAAGUCUCCAGAUACCCCCUGCACCUUGCCCUUCCGCGUGUACAU
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Structure
        10        20          30        40        50        60      
CGUCCGCCGGGGGCUCAGC      UU--|   A       AC      U     UGCGGUGACGGG 
                   AGGUGC    GGUG CUGGAGG  UUAGGU GCACG            G
                   UCCACG    CCAU GACCUCU  AGUCCG CGUGC            C
UACAUGUGCGCCUUCCCGU      UCCC^   A       GA      -     UAAAUCUUCCGC 
 130       120       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Ce Co He Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Novel-18_5p

mirBase accessionNone
Sequence
0- GACUGGAGGACUUAGGUUGCACG -23
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Co-mature sequence

Cfa-Novel-18_3p

mirBase accessionNone
Sequence
51- UGCGCCUGAAGUCUCCAGAUAC -73
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