| MirGeneDB ID | Cfa-Novel-21 |
|---|
| Family name |
CFA-NOVEL-21 (all species) |
|---|
| Seed |
UUCUCAU |
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| Species |
Dog (Canis familiaris) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. familiaris
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| Node of Origin (family) |
C. familiaris
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Genome context
(canFam3_add) |
chrX: 13777803-13777884 [+]
UCSC
Ensembl
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Precursor
(pre-Mir +30nt flank) |
AGUAAGGAUCUUAAAAUCCCCAUUGCCUGUCUUCUCAUGUUUGUACCCUGUGUGGUCCCCCACCACCCUGAGUAUAGGCAAUGUAAUUCACAGGGCACAUACAUGAGAGGACAGGAAUCUUGGGGGCUAUCCUAGAAUUCUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60 70
AGUAAGGAUCUUAAAAUC UUG--| U A UGGUCCCCCACCACCCU
CCCA CCUGUCUUCUCAUGU UGU CCCUGUG G
GGGU GGACAGGAGAGUACA ACA GGGACAC A
GUCUUAAGAUCCUAUCGG UCUAA^ U C UUAAUGUAACGGAUAUG
140 130 120 110 100 90 80 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Bl |
Ce |
Co |
He |
Hy |
Ki |
Ki |
Li |
Lu |
Ov |
Sk |
Te |
Te |
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| Mature sequence |
Cfa-Novel-21_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CUUCUCAUGUUUGUACCCUGUG -22
Get sequence
|
|---|
| Star sequence |
Cfa-Novel-21_3p* |
| mirBase accession | None |
|---|
| Sequence |
60- CAGGGCACAUACAUGAGAGGAC -82
Get sequence
|
|---|
