MirGeneDB ID | Cgi-Bantam |
Family name |
BANTAM (all species) |
Seed |
GAGAUCA |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Bantam
Asu-Bantam-o1
Asu-Bantam-o2
Asu-Bantam-o3
Bge-Bantam
Bpl-Bantam
Cbr-Bantam-P1a
Cbr-Bantam-P1b
Cbr-Bantam-P2
Cbr-Bantam-P3
Cbr-Bantam-P4
Cel-Bantam-P1
Cel-Bantam-P2
Cel-Bantam-P3
Cel-Bantam-P4
Cel-Bantam-P5a
Cel-Bantam-P5b
Cel-Bantam-P5c
Csc-Bantam-P16
Csc-Bantam-P17
Cte-Bantam
Dan-Bantam
Dma-Bantam
Dme-Bantam
Dmo-Bantam
Dpu-Bantam
Dsi-Bantam
Dya-Bantam
Efe-Bantam-P6
Efe-Bantam-P7
Efe-Bantam-P8
Esc-Bantam
Hme-Bantam
Isc-Bantam-P9a
Isc-Bantam-P9b
Lan-Bantam
Lgi-Bantam
Lpo-Bantam-P10
Lpo-Bantam-P11
Lpo-Bantam-P12
Lpo-Bantam-P13
Lpo-Bantam-P14
Lpo-Bantam-P15
Npo-Bantam
Ovu-Bantam
Sme-Bantam-P18
Sme-Bantam-P19
Sme-Bantam-P20
Tca-Bantam
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Protostomia
|
Genome context (CGI_GCA_000297895.1) |
scaffold950: 540423-540481 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGAGAAAAUAUGCCUUUUUAACACACAAAACUGGUUUUCAUAAUGGUUUGAGAUUGUGUUAGAUUCUGAGAUCAUUGUGAAAACUGAUUUUGUAACCACACUCAACUAUAAACCUUGUC
Get precursor sequence
|
Structure | 10 20 30 40 50
AGAGAAAAUAUGCCUUUUUAACAC--| CU G UUGUG
ACAAAA GGUUUUCAUAAUGGUUU AGA \
UGUUUU UCAAAAGUGUUACUAGA UCU U
CUGUUCCAAAUAUCAACUCACACCAA^ AG G UAGAU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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Star sequence |
Cgi-Bantam_5p* |
mirBase accession | None |
Sequence |
0- CUGGUUUUCAUAAUGGUUUGAGA -23
Get sequence
|
Mature sequence |
Cgi-Bantam_3p |
mirBase accession | None |
Sequence |
36- UGAGAUCAUUGUGAAAACUGAUU -59
Get sequence
|