MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-10-P5

Family name MIR-10 (all species)
Seed UACCCUG
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-10-P1  Cgi-Mir-10-P2  Cgi-Mir-10-P3  Cgi-Mir-10-P6 
Orthologues Cte-Mir-10-P5  Efe-Mir-10-P5a  Efe-Mir-10-P5b  Lgi-Mir-10-P5  Nve-Mir-10 
Node of Origin (locus) Lophotrochozoa
Node of Origin (family) Eumetazoa
Genome context
(CGI_GCA_000297895.1)
scaffold145: 700580-700637 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
UCAUCCAUACUCGUAAAAGCCAUGUCUUUUUUACCCUGUAGAACCGAGCGAGUGUAGCCGGUAACACAGCUCGUUUCUGAGGGUUCACAAGACUUUGGAUCAUGCUGCUGAUGUCUGU
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Structure
        10         20         30        40        50         
UCAUCCAUACUCGUAAAAG-   U-|    UUUU     G     C     GA   UAGC 
                    CCA  GUCUU    ACCCU UAGAA CGAGC  GUG    C
                    GGU  CAGAA    UGGGA GUCUU GCUCG  CAC    G
UGUCUGUAGUCGUCGUACUA   UU^    CACU     -     U     A-   AAUG 
      110       100        90        80         70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-10-P5_5p

mirBase accessionNone
Sequence
0- UUACCCUGUAGAACCGAGCGAGUG -24
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Star sequence

Cgi-Mir-10-P5_3p*

mirBase accessionNone
Sequence
36- CAGCUCGUUUCUGAGGGUUCAC -58
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