MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-12

Family name MIR-12 (all species)
Seed GAGUAUU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-12  Bge-Mir-12  Bpl-Mir-12  Csc-Mir-12  Cte-Mir-12  Dan-Mir-12  Dma-Mir-12  Dme-Mir-12  Dmo-Mir-12  Dpu-Mir-12  Dsi-Mir-12  Efe-Mir-12-P1  Efe-Mir-12-P2  Esc-Mir-12  Hme-Mir-12  Isc-Mir-12  Lan-Mir-12-P3  Lan-Mir-12-P4  Lgi-Mir-12  Lpo-Mir-12-P5  Lpo-Mir-12-P6  Lpo-Mir-12-P7  Lpo-Mir-12-P8  Npo-Mir-12  Ovu-Mir-12  Sme-Mir-12-P9  Sme-Mir-12-P10  Sme-Mir-12-P11  Tca-Mir-12 
Node of Origin (locus) Protostomia
Node of Origin (family) Protostomia
Genome context
(CGI_GCA_000297895.1)
scaffold1785: 68054-68110 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAACUUCUACAAGAACUUGGCCAUUGUGAGUGAGUAUUACAUCAGGUACUGAGUGAAAGUAGUUCAGUACCUUCUGUGAUAUUCUUACACAGUGAGUCGCCUGCAGUCACCAUGGAA
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Structure
        10         20         30        40        50        
AAACUUCUACAAGAACUU-   -|      AGU          UC         GUGAA 
                   GGC CAUUGUG   GAGUAUUACA  AGGUACUGA     \
                   CUG GUGACAC   CUUAUAGUGU  UCCAUGACU     A
AAGGUACCACUGACGUCCG   A^      AUU          CU         UGAUG 
     110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-12_5p

mirBase accessionNone
Sequence
0- UGAGUAUUACAUCAGGUACUGA -22
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Star sequence

Cgi-Mir-12_3p*

mirBase accessionNone
Sequence
35- AGUACCUUCUGUGAUAUUCUUA -57
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