MirGeneDB ID | Cgi-Mir-1985 |
Family name |
MIR-1985 (all species) |
Seed |
GCCAUUU |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
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Paralogues |
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Orthologues |
Lgi-Mir-1985
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Node of Origin (locus) |
Mollusca
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Node of Origin (family) |
Mollusca
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Genome context (CGI_GCA_000297895.1) |
scaffold339: 60097-60155 [+]
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUUGCCGAUCUUGGAAAGGGUAGAUCGUCCUGCCAUUUUUAUCAGUCACUGUGUGUUUAGAAAAUCGCAGGACAGAUAUGAAUGGCAUAAUAGACUACCGACAGCUGCCAAUAGAAAAA
Get precursor sequence
|
Structure | 10 20 30 40 50
CUUGCCGAUCUUGGAAAG--| A GUCC- U A A UGUUU
GGUAG UC UGCCAUUU UAUC GUC CUGUG A
CCAUC AG ACGGUAAG AUAG CAG GACGC G
AAAAAGAUAACCGUCGACAG^ - AUAAU U A - UAAAA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
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3' NTU |
No
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Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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Mature sequence |
Cgi-Mir-1985_5p |
mirBase accession | None |
Sequence |
0- UGCCAUUUUUAUCAGUCACUGUG -23
Get sequence
|
Star sequence |
Cgi-Mir-1985_3p* |
mirBase accession | None |
Sequence |
37- CAGGACAGAUAUGAAUGGCAUA -59
Get sequence
|