MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-1985

Family name MIR-1985 (all species)
Seed GCCAUUU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Lgi-Mir-1985 
Node of Origin (locus) Mollusca
Node of Origin (family) Mollusca
Genome context
(CGI_GCA_000297895.1)
scaffold339: 60097-60155 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUUGCCGAUCUUGGAAAGGGUAGAUCGUCCUGCCAUUUUUAUCAGUCACUGUGUGUUUAGAAAAUCGCAGGACAGAUAUGAAUGGCAUAAUAGACUACCGACAGCUGCCAAUAGAAAAA
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Structure
        10          20        30         40        50         
CUUGCCGAUCUUGGAAAG--|    A  GUCC-        U    A   A     UGUUU 
                    GGUAG UC     UGCCAUUU UAUC GUC CUGUG     A
                    CCAUC AG     ACGGUAAG AUAG CAG GACGC     G
AAAAAGAUAACCGUCGACAG^    -  AUAAU        U    A   -     UAAAA 
       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-1985_5p

mirBase accessionNone
Sequence
0- UGCCAUUUUUAUCAGUCACUGUG -23
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Star sequence

Cgi-Mir-1985_3p*

mirBase accessionNone
Sequence
37- CAGGACAGAUAUGAAUGGCAUA -59
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