MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-22-P1

Family name MIR-22 (all species)
Seed GCUGCCU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-22-P2 
Orthologues Aca-Mir-22-P1b  Ami-Mir-22-P1b  Bfl-Mir-22-o1a  Bfl-Mir-22-o1b  Bfl-Mir-22-o1c  Bfl-Mir-22-P1  Bla-Mir-22-o1a  Bla-Mir-22-o1b  Bla-Mir-22-o1c  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cli-Mir-22-P1b  Cmi-Mir-22-P1a  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1a  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Ebu-Mir-22-P1o1  Efe-Mir-22-P1c  Efe-Mir-22-P1d  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1a  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Hsa-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Loc-Mir-22-P1a  Loc-Mir-22-P1b  Mal-Mir-22-P1a  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mml-Mir-22-P1b  Mmu-Mir-22-P1b  Mun-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ovu-Mir-22-P1  Pbv-Mir-22-P1b  Pfl-Mir-22-P1  Pma-Mir-22-P1o2  Pma-Mir-22-P1o3  Rno-Mir-22-P1b  Sha-Mir-22-P1b  Sme-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1a  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  Tni-Mir-22-P1a  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  Xbo-Mir-22-o1d  Xbo-Mir-22-o1e  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4  Xtr-Mir-22-P1b 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)
scaffold726: 82804-82861 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGAUUGGAUAUUGAUGCUGAUGAGCAGACGGCCCUUCACUAGGUAGACUUGAUGAAAUUAACAAGCUGCCUGAUGAAGAGCUGUCCUGCUUAGAUGCAUUUUCAACUGAAAACAUA
Get precursor sequence
Structure
        10          20         30        40        50        
GGAGAUUGGAUAUUGAU--  UGA      -|     C     C       A    AUGA 
                   GC   UGAGCA GACGGC CUUCA UAGGUAG CUUG    A
                   CG   AUUCGU CUGUCG GAAGU GUCCGUC GAAC    A
AUACAAAAGUCAACUUUUA  UAG      C^     A     A       -    AAUU 
      110       100        90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Star sequence

Cgi-Mir-22-P1_5p*

mirBase accessionNone
Sequence
0- CGGCCCUUCACUAGGUAGACUUG -23
Get sequence
Mature sequence

Cgi-Mir-22-P1_3p

mirBase accessionNone
Sequence
35- AGCUGCCUGAUGAAGAGCUGUCC -58
Get sequence