MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-252-P2

Family name MIR-252 (all species)
Seed UAAGUAC
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-252-P1 
Orthologues Aae-Mir-252-P2  Bfl-Mir-252-P2  Bge-Mir-252-P2-v1  Bge-Mir-252-P2-v2  Bla-Mir-252-P2  Cbr-Mir-252-P2  Cel-Mir-252-P2  Csc-Mir-252-P2  Cte-Mir-252-P2  Dan-Mir-252-P2-v1  Dan-Mir-252-P2-v2  Dma-Mir-252-P2  Dme-Mir-252-P2-v1  Dme-Mir-252-P2-v2  Dmo-Mir-252-P2-v1  Dmo-Mir-252-P2-v2  Dpu-Mir-252-P2-v1  Dpu-Mir-252-P2-v2  Dsi-Mir-252-P2-v1  Dsi-Mir-252-P2-v2  Dya-Mir-252-P2-v1  Dya-Mir-252-P2-v2  Hme-Mir-252-P2  Isc-Mir-252-P2-v1  Isc-Mir-252-P2-v2  Lan-Mir-252-P2  Lgi-Mir-252-P2  Lpo-Mir-252-P2c  Lpo-Mir-252-P2d  Npo-Mir-252-P2  Pfl-Mir-252-P2  Pmi-Mir-252-P2  Sko-Mir-252-P2  Spu-Mir-252-P2  Tca-Mir-252-P2  Xbo-Mir-252-P2g  Xbo-Mir-252-P2h 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)
scaffold1366: 106402-106459 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGACAUCAAGACGAGAUUUUAACCCAUUCUUAAGUACUUGUGCCGCGGGAAAGUCUUUGAAUCUUCCCAUGGAUCAAGUAUUUAAUAUCGGGAUUAUUCGAUCUUCAGACAAAUGGC
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Structure
        10        20          30        40        50        
AUGACAUCAAGACGAGAUUUUAA--|  AUUC           UG   C     AGUCU 
                         CCC    UUAAGUACUUG  CCG GGGAA     U
                         GGG    AAUUUAUGAAC  GGU CCCUU     U
CGGUAAACAGACUUCUAGCUUAUUA^  CUAU           UA   A     CUAAG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-252-P2_5p

mirBase accessionNone
Sequence
0- UUAAGUACUUGUGCCGCGGGAA -22
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Star sequence

Cgi-Mir-252-P2_3p*

mirBase accessionNone
Sequence
36- CCCAUGGAUCAAGUAUUUAAUA -58
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