MirGeneDB ID | Cgi-Mir-252-P2 |
Family name |
MIR-252 (all species) |
Seed |
UAAGUAC |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
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Paralogues |
Cgi-Mir-252-P1
|
Orthologues |
Aae-Mir-252-P2
Bfl-Mir-252-P2
Bge-Mir-252-P2-v1
Bge-Mir-252-P2-v2
Bla-Mir-252-P2
Cbr-Mir-252-P2
Cel-Mir-252-P2
Csc-Mir-252-P2
Cte-Mir-252-P2
Dan-Mir-252-P2-v1
Dan-Mir-252-P2-v2
Dma-Mir-252-P2
Dme-Mir-252-P2-v1
Dme-Mir-252-P2-v2
Dmo-Mir-252-P2-v1
Dmo-Mir-252-P2-v2
Dpu-Mir-252-P2-v1
Dpu-Mir-252-P2-v2
Dsi-Mir-252-P2-v1
Dsi-Mir-252-P2-v2
Dya-Mir-252-P2-v1
Dya-Mir-252-P2-v2
Hme-Mir-252-P2
Isc-Mir-252-P2-v1
Isc-Mir-252-P2-v2
Lan-Mir-252-P2
Lgi-Mir-252-P2
Lpo-Mir-252-P2c
Lpo-Mir-252-P2d
Npo-Mir-252-P2
Pfl-Mir-252-P2
Pmi-Mir-252-P2
Sko-Mir-252-P2
Spu-Mir-252-P2
Tca-Mir-252-P2
Xbo-Mir-252-P2g
Xbo-Mir-252-P2h
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
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Genome context (CGI_GCA_000297895.1) |
scaffold1366: 106402-106459 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGACAUCAAGACGAGAUUUUAACCCAUUCUUAAGUACUUGUGCCGCGGGAAAGUCUUUGAAUCUUCCCAUGGAUCAAGUAUUUAAUAUCGGGAUUAUUCGAUCUUCAGACAAAUGGC
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGACAUCAAGACGAGAUUUUAA--| AUUC UG C AGUCU
CCC UUAAGUACUUG CCG GGGAA U
GGG AAUUUAUGAAC GGU CCCUU U
CGGUAAACAGACUUCUAGCUUAUUA^ CUAU UA A CUAAG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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Mature sequence |
Cgi-Mir-252-P2_5p |
mirBase accession | None |
Sequence |
0- UUAAGUACUUGUGCCGCGGGAA -22
Get sequence
|
Star sequence |
Cgi-Mir-252-P2_3p* |
mirBase accession | None |
Sequence |
36- CCCAUGGAUCAAGUAUUUAAUA -58
Get sequence
|