MirGeneDB 2.1
MirGeneDB ID

Cgi-Mir-281

Family name MIR-281 (all species)
Seed AGGGAGC
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues
Orthologues Aae-Mir-281  Asu-Mir-281  Bfl-Mir-281  Bge-Mir-281  Bla-Mir-281  Bpl-Mir-281  Cbr-Mir-281-P3  Cbr-Mir-281-P4  Cel-Mir-281-P3  Cel-Mir-281-P4  Cin-Mir-281  Cmi-Mir-281-v1  Cmi-Mir-281-v2  Csc-Mir-281  Cte-Mir-281  Dan-Mir-281-P1-v1  Dan-Mir-281-P1-v2  Dan-Mir-281-P2-v1  Dan-Mir-281-P2-v2  Dma-Mir-281  Dme-Mir-281-P1-v1  Dme-Mir-281-P1-v2  Dme-Mir-281-P2-v1  Dme-Mir-281-P2-v2  Dmo-Mir-281-P1-v1  Dmo-Mir-281-P1-v2  Dmo-Mir-281-P2-v1  Dmo-Mir-281-P2-v2  Dpu-Mir-281  Dsi-Mir-281-P1-v1  Dsi-Mir-281-P1-v2  Dsi-Mir-281-P2-v1  Dsi-Mir-281-P2-v2  Dya-Mir-281-P1-v1  Dya-Mir-281-P1-v2  Dya-Mir-281-P2-v1  Dya-Mir-281-P2-v2  Ebu-Mir-281  Efe-Mir-281-P5  Efe-Mir-281-P6  Efe-Mir-281-P7  Esc-Mir-281  Hme-Mir-281  Isc-Mir-281  Lan-Mir-281-P9  Lan-Mir-281-P10  Lgi-Mir-281-P8  Lgi-Mir-281-P9  Lpo-Mir-281-P13  Lpo-Mir-281-P14  Lpo-Mir-281-P15  Lpo-Mir-281-P16  Lpo-Mir-281-P17  Npo-Mir-281  Obi-Mir-281  Ovu-Mir-281  Pfl-Mir-281  Pma-Mir-281-P11  Pma-Mir-281-P12  Sko-Mir-281  Sme-Mir-281  Sto-Mir-281  Tca-Mir-281 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold678: 1138602-1138658 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGUGAAAUGAUGAACUGAUCGUACGAUGAAGGGAGCAUCCGUUGACAGUCAGAAAUGACGAGCUGUCAUGGAGUUGCUCUCUUUACCGAGAAGGUCUAUGACAUCACCGUGUUCU
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Structure
        10         20         30          40        50       
AUGGUGAAAUGAUGAACU-    GUA-  A           --|    U      CAGAA 
                   GAUC    CG UGAAGGGAGCA  UCCGU GACAGU     A
                   CUGG    GC AUUUCUCUCGU  AGGUA CUGUCG     U
UCUUGUGCCACUACAGUAU    AAGA  C           UG^    -      AGCAG 
     110       100        90        80        70         60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-281_5p
mirBase accessionNone
Sequence 
0- AAGGGAGCAUCCGUUGACAGU -21
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Co-mature sequence

Cgi-Mir-281_3p
mirBase accessionNone
Sequence 
35- UGUCAUGGAGUUGCUCUCUUUA -57
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