MirGeneDB 2.1
MirGeneDB ID

Cgi-Mir-315-v1

Family name MIR-315 (all species)
Seed UUUGAUU
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-315-v2 
Orthologues Aae-Mir-315  Bge-Mir-315  Bpl-Mir-315  Cbr-Mir-315  Cel-Mir-315  Csc-Mir-315  Cte-Mir-315  Dan-Mir-315  Dma-Mir-315  Dme-Mir-315  Dmo-Mir-315  Dpu-Mir-315  Dsi-Mir-315  Dya-Mir-315  Efe-Mir-315  Esc-Mir-315  Isc-Mir-315  Lan-Mir-315  Lgi-Mir-315  Npo-Mir-315  Obi-Mir-315  Ovu-Mir-315  Pfl-Mir-315  Pma-Mir-315  Sko-Mir-315  Sme-Mir-315  Tca-Mir-315 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)		 scaffold626: 79859-79920 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AACGAGAAUAGUAAUAUAUGUCUCCUCACCUUUUGAUUGUUGCUCAGAAAGCCAUCUCUAAAAAGCGUGGCUAUCGAGCAACAAUCAAAGAUUGAAGGAGACUUGUUAACAGCAAAAUCAUC
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Structure
        10         20         30        40        50        60 
AACGAGAAUAGUAAUAUAU-      -|  CC               A  A    AUCUCUA 
                    GUCUCC UCA  UUUUGAUUGUUGCUC GA AGCC       \
                    CAGAGG AGU  GAAACUAACAACGAG CU UCGG       A
CUACUAAAACGACAAUUGUU      A^  UA               -  A    UGCGAAA 
120       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-315-v1_5p
mirBase accessionNone
Sequence 
0- UUUUGAUUGUUGCUCAGAAAGCC -23
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Star sequence

Cgi-Mir-315-v1_3p*
mirBase accessionNone
Sequence 
40- CUAUCGAGCAACAAUCAAAGAU -62
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