| MirGeneDB ID | Cgi-Mir-92-o33 |
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| Family name |
MIR-92 (all species) |
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| Seed |
AUUGCAC |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
Cgi-Mir-92-o32
Cgi-Mir-92-o34
Cgi-Mir-92-o35
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| Orthologues |
Asu-Mir-92
Cel-Mir-92
Esc-Mir-92
Isc-Mir-92
Obi-Mir-92
Sme-Mir-92
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| Node of Origin (locus) |
C. gigas
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| Node of Origin (family) |
Bilateria
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Genome context
(CGI_GCA_000297895.1) |
scaffold459: 320194-320253 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGAGGGCUUCUAUUAUCAGGGGUCUUGUAUGGGCUGGAGCGGCUGCAAAGCAGUGAUGGUGGUUUCUGUAUUGCACUCGUCCCGGCCGAUAUCUGGACCUCCCUUCCUUCAUCCUCCCUC
Get precursor sequence
|
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| Structure | 10 20 30 40 50
GGAGGGCUUCUAUUAUCA- U-| G AG GC A GUGAUG
GGGGUCU GUAU GGCUGG CG UGCAA GCA G
CUCCAGG UAUA CCGGCC GC ACGUU UGU U
CUCCCUCCUACUUCCUUCC UC^ G CU UC A CUUUGG
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| Comment | It is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending additional data. |
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17), UGUG in loop |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Star sequence |
Cgi-Mir-92-o33_5p* |
| mirBase accession | None |
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| Sequence |
0- GGGCUGGAGCGGCUGCAAAGCA -22
Get sequence
|
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| Mature sequence |
Cgi-Mir-92-o33_3p |
| mirBase accession | None |
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| Sequence |
38- UAUUGCACUCGUCCCGGCCGAU -60
Get sequence
|
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