MirGeneDB ID | Cgi-Mir-96-P1i |
Family name |
MIR-96 (all species) |
Seed |
UUGGCAC |
Species |
Pacific oyster (Crassostrea gigas) |
MiRBase ID |
|
Paralogues |
Cgi-Mir-96-P1h
Cgi-Mir-96-P2l
Cgi-Mir-96-P2m
Cgi-Mir-96-P3
|
Orthologues |
Ami-Mir-96-P1
Bfl-Mir-96-P1
Bla-Mir-96-P1
Bta-Mir-96-P1
Cfa-Mir-96-P1
Cin-Mir-96-P1
Cli-Mir-96-P1
Cmi-Mir-96-P1
Cpi-Mir-96-P1
Cpo-Mir-96-P1
Cte-Mir-96-P1
Dno-Mir-96-P1
Efe-Mir-96-P1
Ete-Mir-96-P1
Gga-Mir-96-P1
Gja-Mir-96-P1
Hsa-Mir-96-P1
Isc-Mir-96-P1
Lan-Mir-96-P1
Lch-Mir-96-P1
Lgi-Mir-96-P1i
Loc-Mir-96-P1
Mdo-Mir-96-P1
Mml-Mir-96-P1
Mmu-Mir-96-P1
Mun-Mir-96-P1
Npo-Mir-96-P1i
Oan-Mir-96-P1
Ocu-Mir-96-P1
Pbv-Mir-96-P1
Pfl-Mir-96-P1
Pmi-Mir-96-P1
Rno-Mir-96-P1
Sha-Mir-96-P1
Sko-Mir-96-P1
Spt-Mir-96-P1
Spu-Mir-96-P1
Sto-Mir-96-P1
Tgu-Mir-96-P1
Xbo-Mir-96-P1
Xtr-Mir-96-P1
|
Node of Origin (locus) |
Mollusca
|
Node of Origin (family) |
Bilateria
|
Genome context (CGI_GCA_000297895.1) |
scaffold591: 1189388-1189446 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCUGAGCGGAAGUAUUUCCUGUUGGUCGUUCUUGGCACUGGCGGAAUAAUCACGUGACAAGUAAAGUGGUUGUUCCCUUGUGUCAAUAAUGAACUCACGGAGUGUCGCCUAGUUCUAUG
Get precursor sequence
|
Structure | 10 20 30 40 50
UCUGAGCGGAAGUAUUUC- U -| C U C GUGAC
CUGU GG UCGUU UUGGCAC GG GGAAUAAUCAC A
GGCA UC AGUAA AACUGUG UC CCUUGUUGGUG A
GUAUCUUGAUCCGCUGUGA C A^ U U - AAAUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Cgi-Mir-96-P1i_5p |
mirBase accession | None |
Sequence |
0- CUUGGCACUGGCGGAAUAAUCAC -23
Get sequence
|
Star sequence |
Cgi-Mir-96-P1i_3p* |
mirBase accession | None |
Sequence |
37- GGUUGUUCCCUUGUGUCAAUAA -59
Get sequence
|