MirGeneDB 2.1

MirGeneDB ID

Cgi-Mir-96-P2l

Family name MIR-96 (all species)
Seed UUGGCAC
Species Pacific oyster (Crassostrea gigas)
MiRBase ID
Paralogues Cgi-Mir-96-P1h  Cgi-Mir-96-P1i  Cgi-Mir-96-P2m  Cgi-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dma-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dsi-Mir-96-P2  Dya-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ovu-Mir-96-P2  Pbv-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) C. gigas
Node of Origin (family) Bilateria
Genome context
(CGI_GCA_000297895.1)
scaffold626: 26567-26631 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUGAGAGUUGGGGUUAAAAGCGUGCAGAUCUUGGCACUUGUAGAAUUCACUGAUACUUGAAUAUUUAAUCUCAGUGAAUCUAUAGUGGCAACCGCGGCACGCUACUCUGAACAUCGUGGGAGCA
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Structure
        10          20        30        40        50        60   
ACUGAGAGUUGGGGUUAAA--|      AGAUC   G    U     A        UACUUGAA 
                     AGCGUGC     UUG CACU GUAGA UUCACUGA        \
                     UCGCACG     AAC GUGA UAUCU AAGUGACU        U
ACGAGGGUGCUACAAGUCUCA^      GCGCC   G    -     -        CUAAUUUA 
   120       110       100        90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
A- D- D- Eg F- Gi He Ju L- Ma Ma Pe Re Sp Um Ea Fe Ha La Ma
Mature sequence

Cgi-Mir-96-P2l_5p

mirBase accessionNone
Sequence
0- CUUGGCACUUGUAGAAUUCACUGA -24
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Star sequence

Cgi-Mir-96-P2l_3p*

mirBase accessionNone
Sequence
43- AGUGAAUCUAUAGUGGCAACCG -65
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