| MirGeneDB ID | Cgi-Novel-7 |
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| Family name |
CGI-NOVEL-20 (all species) |
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| Seed |
GUGGUGC |
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| Species |
Pacific oyster (Crassostrea gigas) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
C. gigas
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| Node of Origin (family) |
C. gigas
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Genome context
(CGI_GCA_000297895.1) |
scaffold43364: 108910-108968 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
ACACGUUUGUCAUCCAUGGAAGAAUACACCAGUGGUGCUCAUUUGUCGAAACUGUAAAUAGCCUCAGUUUUGCAUCUGUGUAUUCCUGGUGAAAGAUUAACAUCCGACACGGUUAAUAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
ACACGUUUGUCAUCCAUGGAAGAAUA--| UG U UU U GUAAA
CACCAG GUGC CA UG CGAAACU U
GUGGUC UAUG GU AC GUUUUGA A
AAUAAUUGGCACAGCCUACAAUUAGAAA^ CU U CU - CUCCG
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| Comment | There is a second Dicer cut +1 on both arms. |
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| 3' NTU |
No
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Mature sequence |
Cgi-Novel-7_5p |
| mirBase accession | None |
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| Sequence |
0- AGUGGUGCUCAUUUGUCGAAACU -23
Get sequence
|
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| Star sequence |
Cgi-Novel-7_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- UUUUGCAUCUGUGUAUUCCUGG -59
Get sequence
|
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