MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-192-P1

Family name MIR-192 (all species)
Seed UGACCUA
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-215
Paralogues
Orthologues Aca-Mir-192-P1  Ami-Mir-192-P1  Bta-Mir-192-P1  Cfa-Mir-192-P1  Cmi-Mir-192-P1  Cpi-Mir-192-P1  Cpo-Mir-192-P1  Dno-Mir-192-P1  Ebu-Mir-192-o1  Ete-Mir-192-P1  Gga-Mir-192-P1  Gja-Mir-192-P1  Hsa-Mir-192-P1  Lch-Mir-192-P1  Mdo-Mir-192-P1  Mml-Mir-192-P1  Mmu-Mir-192-P1  Mun-Mir-192-P1  Oan-Mir-192-P1  Oan-Mir-192-P1-as  Ocu-Mir-192-P1  Pbv-Mir-192-P1  Pma-Mir-192-o1  Rno-Mir-192-P1  Spt-Mir-192-P1  Sto-Mir-192-P1  Tgu-Mir-192-P1  Xla-Mir-192-P1a  Xla-Mir-192-P1b  Xtr-Mir-192-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)
scaffold54: 1524407-1524465 [-]
Clustered miRNAs
(< 50kb from Mir-192-P1)
Mir-192-P1 scaffold54: 1524407-1524465 [-]
Mir-194-P1 scaffold54: 1524720-1524775 [-]
Precursor
(pre-Mir +30nt flank)
UAGGCUUAAUAAGAACUGGUGUCCAGGAAAAUGACCUAUGAAUUGACAGACUGCUUUCUAAACUUGCCUGUCAUUUCUAUAGGCCAAUAUUCUGCACACUUUCACUACUCUAGUUACAG
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Structure
        10          20        30         40        50        
UAGGCUUAAUAAGAACU--     C     AAA  A     -|  U      ACUGCUUU 
                   GGUGU CAGGA   UG CCUAU GAA UGACAG        C
                   UCACA GUCUU   AC GGAUA CUU ACUGUC        U
GACAUUGAUCUCAUCACUU     C     AUA  C     U^  U      CGUUCAAA 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-192-P1_5p

mirBase accessionMIMAT0038594
Sequence
0- AUGACCUAUGAAUUGACAGACU -22
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Star sequence

Cli-Mir-192-P1_3p*

mirBase accessionMIMAT0038595
Sequence
36- CCUGUCAUUUCUAUAGGCCAAUA -59
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