MirGeneDB 2.1
MirGeneDB ID

Cli-Mir-194-P1

Family name MIR-194 (all species)
Seed GUAACAG
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-194
Paralogues
Orthologues Aca-Mir-194-P1  Ami-Mir-194-P1  Bta-Mir-194-P1  Cfa-Mir-194-P1  Cmi-Mir-194-P1  Cpi-Mir-194-P1  Ebu-Mir-194-o1  Ete-Mir-194-P1  Gga-Mir-194-P1  Gja-Mir-194-P1  Hsa-Mir-194-P1  Lch-Mir-194-P1  Mml-Mir-194-P1  Mmu-Mir-194-P1  Mun-Mir-194-P1  Oan-Mir-194-P1  Ocu-Mir-194-P1  Pbv-Mir-194-P1  Pma-Mir-194-o1  Rno-Mir-194-P1  Spt-Mir-194-P1  Sto-Mir-194-P1  Tgu-Mir-194-P1  Xla-Mir-194-P1a  Xla-Mir-194-P1b  Xtr-Mir-194-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(colLiv2)		 scaffold54: 1524720-1524775 [-]
Clustered miRNAs
(< 50kb from Mir-194-P1)		 Mir-192-P1 scaffold54: 1524407-1524465 [-]
Mir-194-P1 scaffold54: 1524720-1524775 [-]
Precursor
(pre-Mir +30nt flank)
CACUCGAGACUGACCAUGGGCGCUCUCAGAUGUAACAGCAACUCCAUGUGGACUACACUGACUUCCAGUGGAGAUGCUGUUACUUUUGAUAGCCUCUCAAAAACUCCGGAGCAGCU
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Structure
        10           20        30        40        50        
CACUCGAGACUGACCAU---|  C   C     U         A      G    CUACA 
                    GGG GCU UCAGA GUAACAGCA CUCCAU UGGA     \
                    CUC CGA AGUUU CAUUGUCGU GAGGUG ACCU     C
UCGACGAGGCCUCAAAAACU^  -   U     U         A      -    UCAGU 
    110       100         90        80        70         60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Cl Cl Cl Cl Cl To
Mature sequence

Cli-Mir-194-P1_5p
mirBase accessionMIMAT0038568
Sequence 
0- UGUAACAGCAACUCCAUGUGGAC -23
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Star sequence

Cli-Mir-194-P1_3p*
mirBase accessionMIMAT0038569
Sequence 
34- CCAGUGGAGAUGCUGUUACUUU -56
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