| MirGeneDB ID | Cli-Mir-205-P2 |
|---|
| Family name |
MIR-205 (all species) |
|---|
| Seed |
CCUUCAU |
|---|
| Species |
Rock pigeon (Columba livia) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
Cli-Mir-205-P4
|
|---|
| Orthologues |
Aca-Mir-205-P2
Ami-Mir-205-P2
Cmi-Mir-205-P2
Cpi-Mir-205-P2
Gga-Mir-205-P2
Gja-Mir-205-P2
Pbv-Mir-205-P2
Pma-Mir-205-o2
Spt-Mir-205-P2
Sto-Mir-205-P2
Tgu-Mir-205-P2
|
|---|
| Node of Origin (locus) |
Gnathostomata
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(colLiv2) |
scaffold121: 707087-707145 [+]
|
|---|
Precursor
(pre-Mir +30nt flank) |
AGGUACAGCAGCCUCAGGGCCUUCUUGGCACCCUUCAUUCCACCGGAAUCUGUCUAUACAGAAACCAGAUUUCAGUGAAAUGAAGCCUGUCAGAGAGGCAGGUCAUCCCCCACCUCAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AGGUACAGCAGCCUCAGG--| UC CC C C UCUAUA
GCCU UUGGCA CUUCAUU CAC GGAAUCUG \
CGGA GACUGU GAAGUAA GUG CUUUAGAC C
CGACUCCACCCCCUACUGGA^ GA CC A A CAAAGA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
Go to detailed chart
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
|
|---|
| Mature sequence |
Cli-Mir-205-P2_5p |
| mirBase accession | None |
|---|
| Sequence |
0- CCCUUCAUUCCACCGGAAUCUG -22
Get sequence
|
|---|
| Star sequence |
Cli-Mir-205-P2_3p* |
| mirBase accession | None |
|---|
| Sequence |
37- GAUUUCAGUGAAAUGAAGCCUG -59
Get sequence
|
|---|
