Mir-7-P2

MirGeneDB ID

Cli-Mir-7-P2

Family name

MIR-7 (all species)

Seed

GGAAGAC

Species

Rock pigeon (Columba livia)

MiRBase ID

cli-mir-7a-1

Paralogues

Cli-Mir-7-P1 Cli-Mir-7-P3 Cli-Mir-7-P4

Orthologues

Aae-Mir-7 Aca-Mir-7-P2 Aga-Mir-7 Agr-Mir-7 Ami-Mir-7-P2 Asu-Mir-7 Bfl-Mir-7 Bge-Mir-7 Bla-Mir-7 Bta-Mir-7-P2 Cfa-Mir-7-P2 Cin-Mir-7 Cja-Mir-7-P2 Cmi-Mir-7-P2 Cpi-Mir-7-P2 Cpo-Mir-7-P2 Cte-Mir-7 Dan-Mir-7 Dlo-Mir-7 Dma-Mir-7 Dme-Mir-7 Dmo-Mir-7 Dno-Mir-7-P2 Dre-Mir-7-P2b Dsi-Mir-7 Dya-Mir-7 Eba-Mir-7 Eca-Mir-7-P2 Esc-Mir-7 Ete-Mir-7-P2 Gga-Mir-7-P2c Gga-Mir-7-P2d Gja-Mir-7-P2 Gmo-Mir-7-P2a Gpa-Mir-7 Gsa-Mir-7 Gsp-Mir-7 Hme-Mir-7 Hmi-Mir-7 Hru-Mir-7 Hsa-Mir-7-P2 Isc-Mir-7 Laf-Mir-7-P2 Lan-Mir-7 Lch-Mir-7-P2 Lgi-Mir-7 Llo-Mir-7 Loc-Mir-7-P2 Lpo-Mir-7 Mal-Mir-7-P2a Mdo-Mir-7-P2 Mgi-Mir-7 Mml-Mir-7-P2 Mmr-Mir-7-P2 Mmu-Mir-7-P2 Mom-Mir-7 Mun-Mir-7-P2 Neu-Mir-7-P2 Npo-Mir-7 Oan-Mir-7-P2 Obi-Mir-7 Ocu-Mir-7-P2 Ofu-Mir-7 Ovu-Mir-7 Pab-Mir-7-P2 Pau-Mir-7 Pbv-Mir-7-P2 Pca-Mir-7 Pcr-Mir-7 Pdu-Mir-7 Pfl-Mir-7 Pma-Mir-7-o2 Pmi-Mir-7 Pve-Mir-7 Rno-Mir-7-P2 Rph-Mir-7 Sha-Mir-7-P2 Sko-Mir-7 Sne-Mir-7 Snu-Mir-7 Spt-Mir-7-P2 Spu-Mir-7 Sro-Mir-7 Sto-Mir-7-P2 Tca-Mir-7 Tgu-Mir-7-P2 War-Mir-7 Xbo-Mir-7 Xla-Mir-7-P2e Xla-Mir-7-P2f Xtr-Mir-7-P2

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(colLiv2)

scaffold432: 147017-147080 [+]

Precursor
(pre-Mir +30nt flank)

GAUUUCAGUGGAUGUUGGUCUAGUUCUGUGUGGAAGACUAGUGAUUUUGUUGUUUUUAGAUAACUAAAUUGACAACAAAUCGCAGUCUGCCAUAUAGCACAGACUGUGCCUCUACAGGUCAAGU

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Structure

        10           20        30        40        50        60  
GAUUUCAGUGGAUGUUG---|   A  U        A     A       U      UUUAGAU 
                    GUCU GU CUGUGUGG AGACU GUGAUUU GUUGUU       A
                    CAGA CA GAUAUACC UCUGA CGCUAAA CAACAG       A
UGAACUGGACAUCUCCGUGU^   -  C        G     -       -      UUAAAUC 
  120       110        100        90         80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Li	Mi	Ov	Pe	Te	To

Mature sequence

Cli-Mir-7-P2_5p

mirBase accession

MIMAT0038396

Sequence

0- UGGAAGACUAGUGAUUUUGUUGUU -24

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Star sequence

Cli-Mir-7-P2_3p*

mirBase accession

MIMAT0038397

Sequence

42- CAACAAAUCGCAGUCUGCCAUA -64

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