MirGeneDB 2.1

MirGeneDB ID

Cli-Mir-9643

Family name MIR-9643 (all species)
Seed GCGGCCG
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-9643
Paralogues
Orthologues
Node of Origin (locus) C. livia
Node of Origin (family) C. livia
Genome context
(colLiv2)
scaffold182: 66204-66259 [+]
Precursor
(pre-Mir +30nt flank)
UGUGGUACCGAUCCUGUGGUACCGACCCUGCGCGGCCGGUACUGAUCCUGCAGUACCAACCCUGUGCGGCCGGUACUGACCCUGCAUGGCUGGUACCAAUCCUGCACGAUCAAUCC
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Structure
        10          20        30        40        50        
UGUGGUACCGAUCCUGU--|      A  C    C  C        AUC     GUACC 
                   GGUACCG CC UGCG GG CGGUACUG   CUGCA     A
                   CCAUGGU GG ACGU CC GUCAUGGC   GGCGU     A
CCUAACUAGCACGUCCUAA^      C  U    C  A        C--     GUCCC 
    110       100        90        80        70          60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Cl Cl Cl Cl Cl To
Star sequence

Cli-Mir-9643_5p*

mirBase accessionMIMAT0038779
Sequence
0- CGCGGCCGGUACUGAUCCUGCA -22
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Mature sequence

Cli-Mir-9643_3p

mirBase accessionMIMAT0038780
Sequence
34- UGCGGCCGGUACUGACCCUGCA -56
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