MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-143

Family name MIR-143 (all species)
Seed GAGAUGA
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-143  Ami-Mir-143  Bta-Mir-143  Cfa-Mir-143  Cja-Mir-143  Cli-Mir-143  Cpi-Mir-143  Cpo-Mir-143  Dno-Mir-143  Dre-Mir-143  Ebu-Mir-143  Eca-Mir-143  Ete-Mir-143  Gga-Mir-143  Gja-Mir-143  Gmo-Mir-143  Hsa-Mir-143  Laf-Mir-143  Lch-Mir-143  Loc-Mir-143  Mal-Mir-143  Mdo-Mir-143  Mml-Mir-143  Mmr-Mir-143  Mmu-Mir-143  Mun-Mir-143  Neu-Mir-143  Oan-Mir-143  Ocu-Mir-143  Pab-Mir-143  Pbv-Mir-143  Pma-Mir-143  Rno-Mir-143  Sha-Mir-143  Spt-Mir-143  Sto-Mir-143  Tgu-Mir-143  Xla-Mir-143-P1  Xla-Mir-143-P2  Xtr-Mir-143 
Node of Origin (locus) Vertebrata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636010.1: 209440-209494 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGAGGACGGCCAACACAUCAAUCAGCCAGAGGUGCAGUGCUGCAUCUCUGGUUAGUUGUGAGUCUGAGAUGAAGCACUGUAGCUCUGGAGGAUGAACACUGCAUCAAUGGCCUUG
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Structure
        10           20        30        40        50       
GGAGGACGGCCAACACA---|  A  AG      G         G      UGGUUAGU 
                    UCA UC  CCAGAG UGCAGUGCU CAUCUC        \
                    AGU AG  GGUCUC AUGUCACGA GUAGAG        U
GUUCCGGUAACUACGUCACA^  -  GA      G         A      UCUGAGUG 
   110       100         90        80        70        60
Deep sequencing
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CommentBased on the 3-DcRNAs and phylogenetic considerations it is assumed that the templated 3' U is a post-transcriptional addition.
3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-143_5p*
mirBase accessionNone
Sequence 
0- GGUGCAGUGCUGCAUCUCUGG -21
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Mature sequence

Cmi-Mir-143_3p
mirBase accessionNone
Sequence 
34- UGAGAUGAAGCACUGUAGCUC -55
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