MirGeneDB 2.1

MirGeneDB ID

Cmi-Novel-18

Family name CMI-NOVEL-18 (all species)
Seed CGGAGAG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues
Node of Origin (locus) C. milii
Node of Origin (family) C. milii
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)
KI635881.1: 6475443-6475505 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGAAGAGAGUUGCAGUUGUCCUCUGAUGAACGGAGAGUGCACUGUCAUCACUACUGGCUUGAUUUGAAGGUGAUGACAUGACAUUCCUGUCAACAGAGUUGCUCCUUUUCUUCUGAACAGGG
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Structure
        10        20           30        40         50        60 
UUGAAGAGAGUUGCAGUUGUC---|    A   A   A     -  C          ACUGGCU 
                        CUCUG UGA CGG GAGUG CA UGUCAUCACU       U
                        GAGAC ACU GUC CUUAC GU ACAGUAGUGG       G
GGGACAAGUCUUCUUUUCCUCGUU^    A   -   -     A  -          AAGUUUA 
 120       110       100         90         80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Novel-18_5p

mirBase accessionNone
Sequence
0- ACGGAGAGUGCACUGUCAUCACU -23
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Star sequence

Cmi-Novel-18_3p*

mirBase accessionNone
Sequence
41- UGAUGACAUGACAUUCCUGUCA -63
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